Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30680
         (793 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC27D7.09c |||But2 family protein|Schizosaccharomyces pombe|ch...    27   3.1  
SPBC336.15 |pic1|SPBC685.01|INCENP-like|Schizosaccharomyces pomb...    26   5.4  
SPBP22H7.09c |mis15||kinetochore protein Mis15 |Schizosaccharomy...    26   5.4  
SPCC188.08c |ubp22|ubp5|ubiquitin C-terminal hydrolase Ubp22|Sch...    26   7.1  
SPBC115.03 ||SPBC839.18c|gfo/idh/mocA family oxidoreductase |Sch...    26   7.1  

>SPAC27D7.09c |||But2 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 383

 Score = 27.1 bits (57), Expect = 3.1
 Identities = 19/48 (39%), Positives = 24/48 (50%)
 Frame = -1

Query: 583 TSPLTITIEHSKIVYELIFFNVSRVARSCESWDIPIRYCSPSRIAHCG 440
           TS   IT+E S  V + I FN+S VA      D  +    P+RIA  G
Sbjct: 288 TSGFPITVEGSNGVGQFILFNLSSVAN-----DSTVYSNRPNRIAEIG 330


>SPBC336.15 |pic1|SPBC685.01|INCENP-like|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1018

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 11/35 (31%), Positives = 20/35 (57%)
 Frame = -1

Query: 562 IEHSKIVYELIFFNVSRVARSCESWDIPIRYCSPS 458
           I+ +++   L  F+ + V R    W++P+R  SPS
Sbjct: 158 IKETRLPTNLPAFSPTSVERRFTEWNVPLRETSPS 192


>SPBP22H7.09c |mis15||kinetochore protein Mis15 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 409

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 8/14 (57%), Positives = 10/14 (71%)
 Frame = +1

Query: 739 HRFLIYNWTKGIYL 780
           HR L+Y+W  G YL
Sbjct: 80  HRMLVYDWPNGFYL 93


>SPCC188.08c |ubp22|ubp5|ubiquitin C-terminal hydrolase
           Ubp22|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1108

 Score = 25.8 bits (54), Expect = 7.1
 Identities = 18/74 (24%), Positives = 38/74 (51%), Gaps = 7/74 (9%)
 Frame = +2

Query: 14  VVDGISFSKTGSPRSARSYEALADDPKIREQQVEERIMDN-------VVDFLDSHVLQLR 172
           +VD +   KT +     + + +  +P  R   +E+ I+++       + DFL + VL L 
Sbjct: 754 MVDFLRLEKTFTQSELSTGDIICFEP-CRPSALEDDIVNSGFDSALKLYDFLSNKVLVLF 812

Query: 173 MPKYFEEDNSVEEE 214
            P++ ++D+ +E E
Sbjct: 813 RPRFIDQDSIIEFE 826


>SPBC115.03 ||SPBC839.18c|gfo/idh/mocA family oxidoreductase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 368

 Score = 25.8 bits (54), Expect = 7.1
 Identities = 14/47 (29%), Positives = 24/47 (51%)
 Frame = -1

Query: 673 NSQILAVNLRAKIHFK*INFALK*IRFASRTSPLTITIEHSKIVYEL 533
           N +++ V+L   +H + +  AL   +      P T T E +K +YEL
Sbjct: 68  NIELVVVSLPPNVHSEIVKKALNAGKHVVCEKPFTPTYEEAKELYEL 114


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,917,460
Number of Sequences: 5004
Number of extensions: 53493
Number of successful extensions: 146
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 144
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 146
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 385381248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)