Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30680
         (793 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_02_0241 - 8204430-8205398                                           30   2.4  
07_02_0006 - 11663297-11663308,11663587-11663783,11663860-116639...    28   9.8  

>02_02_0241 - 8204430-8205398
          Length = 322

 Score = 29.9 bits (64), Expect = 2.4
 Identities = 19/64 (29%), Positives = 33/64 (51%), Gaps = 1/64 (1%)
 Frame = -1

Query: 580 SPLTITIEHSKIVYELIFFNVSRVARSCESWDIPIRYCSPSRIAHCGTAQTN-HCWIWSF 404
           +P+ +  EH++ V+ L +  V R A    SWD  ++  SP R A   T + + +C   + 
Sbjct: 102 NPVRLLREHAREVHGLDWNPVRRDAFLSASWDDTLKLWSPDRPASVRTFRGHEYCVYAAA 161

Query: 403 WNLR 392
           W+ R
Sbjct: 162 WSAR 165


>07_02_0006 -
           11663297-11663308,11663587-11663783,11663860-11663948,
           11664087-11664166,11664747-11664851,11664951-11665031,
           11665135-11665218,11665352-11665449,11666203-11666297,
           11666380-11666453,11666549-11666826,11666920-11667190
          Length = 487

 Score = 27.9 bits (59), Expect = 9.8
 Identities = 14/39 (35%), Positives = 22/39 (56%)
 Frame = -3

Query: 377 LKAAAMKAIFPRMYALNTAKAMMARNKGIRAANLSLRRA 261
           + AA +    PR+    T +A   +++GI+   LSLRRA
Sbjct: 46  MAAALLPETAPRLLTPETIRAAAKQSQGIQLVPLSLRRA 84


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,683,947
Number of Sequences: 37544
Number of extensions: 382961
Number of successful extensions: 903
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 886
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 903
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2138915688
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)