Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30680
         (793 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_11270| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.5  
SB_11767| Best HMM Match : Kinesin (HMM E-Value=0)                     28   10.0 

>SB_11270| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 145

 Score = 28.3 bits (60), Expect = 7.5
 Identities = 13/30 (43%), Positives = 18/30 (60%), Gaps = 3/30 (10%)
 Frame = -1

Query: 523 NVSRVARSCESWDIP---IRYCSPSRIAHC 443
           N++R+  +C   D+P    RYCSPSR   C
Sbjct: 78  NINRIPLTCLGIDVPHSSSRYCSPSRGFAC 107


>SB_11767| Best HMM Match : Kinesin (HMM E-Value=0)
          Length = 1230

 Score = 27.9 bits (59), Expect = 10.0
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = -1

Query: 472 YCSPSRIAHCGTAQTNHC 419
           +C+ + IAHC T  T HC
Sbjct: 181 HCTATSIAHCTTTSTAHC 198


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,944,347
Number of Sequences: 59808
Number of extensions: 420246
Number of successful extensions: 1091
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 976
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1091
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2179815638
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)