Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30680
         (793 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ485319-1|ABF21078.1|  175|Apis mellifera icarapin variant 2 pr...    24   1.9  
AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    24   1.9  
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    24   1.9  
M29494-1|AAA27729.1|   74|Apis mellifera protein ( Bee homeobox-...    22   5.7  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    22   7.5  
AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase pro...    22   7.5  

>DQ485319-1|ABF21078.1|  175|Apis mellifera icarapin variant 2
           precursor protein.
          Length = 175

 Score = 23.8 bits (49), Expect = 1.9
 Identities = 9/30 (30%), Positives = 16/30 (53%)
 Frame = +1

Query: 22  WHQLFQNRKPTLRQELRGIS*RPEDQGAAS 111
           W+Q  Q     +R+++ GI  R  +QG  +
Sbjct: 40  WYQTLQTHMKKVREQMAGILSRIPEQGVVN 69


>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 23.8 bits (49), Expect = 1.9
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = -2

Query: 138 TTLSMILSSTCCSLIFGSSAN 76
           T LSMI  +TC +L  G + N
Sbjct: 356 TMLSMISGATCYALFLGHATN 376


>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 23.8 bits (49), Expect = 1.9
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = -2

Query: 138 TTLSMILSSTCCSLIFGSSAN 76
           T LSMI  +TC +L  G + N
Sbjct: 324 TMLSMISGATCYALFLGHATN 344


>M29494-1|AAA27729.1|   74|Apis mellifera protein ( Bee
           homeobox-containing gene,partial cds, clone H15. ).
          Length = 74

 Score = 22.2 bits (45), Expect = 5.7
 Identities = 8/15 (53%), Positives = 12/15 (80%)
 Frame = +1

Query: 34  FQNRKPTLRQELRGI 78
           FQNR+  L++ELR +
Sbjct: 56  FQNRRMKLKKELRAV 70


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 21.8 bits (44), Expect = 7.5
 Identities = 7/31 (22%), Positives = 16/31 (51%)
 Frame = +1

Query: 676  TPSAVPVTHLFKKKTIFLFLNHRFLIYNWTK 768
            TP+ V +  +   + + + L   FL+  W++
Sbjct: 1112 TPAPVVLEAVHASRRVLIVLTRNFLLTEWSR 1142


>AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase
           protein.
          Length = 580

 Score = 21.8 bits (44), Expect = 7.5
 Identities = 6/17 (35%), Positives = 12/17 (70%)
 Frame = +1

Query: 460 WESNNGWGCPRTHRTWL 510
           W+++   G  +T++TWL
Sbjct: 428 WDNSTSAGFSQTNKTWL 444


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 197,044
Number of Sequences: 438
Number of extensions: 3685
Number of successful extensions: 7
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25003662
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)