Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30680
(793 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g50440.2 68414.m05654 zinc finger (C3HC4-type RING finger) fa... 31 0.88
At1g50440.1 68414.m05653 zinc finger (C3HC4-type RING finger) fa... 31 0.88
At3g18524.1 68416.m02355 DNA mismatch repair protein MSH2 (MSH2)... 30 2.0
At1g15440.2 68414.m01856 transducin family protein / WD-40 repea... 30 2.0
At1g15440.1 68414.m01855 transducin family protein / WD-40 repea... 30 2.0
At3g54780.2 68416.m06062 zinc finger (C3HC4-type RING finger) fa... 28 6.2
At3g54780.1 68416.m06061 zinc finger (C3HC4-type RING finger) fa... 28 6.2
At1g32610.1 68414.m04024 hydroxyproline-rich glycoprotein family... 28 6.2
At3g10760.1 68416.m01295 myb family transcription factor contain... 28 8.2
>At1g50440.2 68414.m05654 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger)
Length = 250
Score = 31.1 bits (67), Expect = 0.88
Identities = 16/44 (36%), Positives = 23/44 (52%)
Frame = +2
Query: 44 GSPRSARSYEALADDPKIREQQVEERIMDNVVDFLDSHVLQLRM 175
G + R Y LA +E VE+R NV + SHV++L+M
Sbjct: 203 GQKINERHYHVLAKQELTKEYIVEDRDCKNVPELDQSHVMELKM 246
>At1g50440.1 68414.m05653 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger)
Length = 250
Score = 31.1 bits (67), Expect = 0.88
Identities = 16/44 (36%), Positives = 23/44 (52%)
Frame = +2
Query: 44 GSPRSARSYEALADDPKIREQQVEERIMDNVVDFLDSHVLQLRM 175
G + R Y LA +E VE+R NV + SHV++L+M
Sbjct: 203 GQKINERHYHVLAKQELTKEYIVEDRDCKNVPELDQSHVMELKM 246
>At3g18524.1 68416.m02355 DNA mismatch repair protein MSH2 (MSH2)
identical to SP|O24617 DNA mismatch repair protein MSH2
(AtMsh2) {Arabidopsis thaliana}
Length = 937
Score = 29.9 bits (64), Expect = 2.0
Identities = 10/42 (23%), Positives = 25/42 (59%)
Frame = +2
Query: 20 DGISFSKTGSPRSARSYEALADDPKIREQQVEERIMDNVVDF 145
DG+ F+ T + Y+++ DD + ++++ +R+++ V F
Sbjct: 544 DGVKFTNTKLKKLGDQYQSVVDDYRSCQKELVDRVVETVTSF 585
>At1g15440.2 68414.m01856 transducin family protein / WD-40 repeat
family protein Strong similarity to gb X95263 Periodic
tryptophan protein 2 gene (PWP2) from Homo sapiens and
contains 6 WD40, G-beta repeat domains
Length = 860
Score = 29.9 bits (64), Expect = 2.0
Identities = 22/68 (32%), Positives = 33/68 (48%), Gaps = 2/68 (2%)
Frame = +2
Query: 20 DGISFSKTGSPRSARSYEALADDPKIREQQVEERI-MDNVVDFLDSHVLQLRMP-KYFEE 193
DG G+ R Y+ +AD +R Q+ + +D V+DFL S + P ++
Sbjct: 592 DGGYILAAGTSRYICMYD-IADQVLLRRFQISHNLSLDGVLDFLHSKKMTEAGPIDLIDD 650
Query: 194 DNSVEEEG 217
DNS EE G
Sbjct: 651 DNSDEEGG 658
>At1g15440.1 68414.m01855 transducin family protein / WD-40 repeat
family protein Strong similarity to gb X95263 Periodic
tryptophan protein 2 gene (PWP2) from Homo sapiens and
contains 6 WD40, G-beta repeat domains
Length = 900
Score = 29.9 bits (64), Expect = 2.0
Identities = 22/68 (32%), Positives = 33/68 (48%), Gaps = 2/68 (2%)
Frame = +2
Query: 20 DGISFSKTGSPRSARSYEALADDPKIREQQVEERI-MDNVVDFLDSHVLQLRMP-KYFEE 193
DG G+ R Y+ +AD +R Q+ + +D V+DFL S + P ++
Sbjct: 632 DGGYILAAGTSRYICMYD-IADQVLLRRFQISHNLSLDGVLDFLHSKKMTEAGPIDLIDD 690
Query: 194 DNSVEEEG 217
DNS EE G
Sbjct: 691 DNSDEEGG 698
>At3g54780.2 68416.m06062 zinc finger (C3HC4-type RING finger)
family protein low similarity to SP|P79263
Inter-alpha-trypsin inhibitor heavy chain H4 precursor
{Sus scrofa}; contains Pfam profiles PF00097: Zinc
finger, C3HC4 type (RING finger), PF00092: von
Willebrand factor type A domain
Length = 676
Score = 28.3 bits (60), Expect = 6.2
Identities = 12/23 (52%), Positives = 16/23 (69%)
Frame = +2
Query: 146 LDSHVLQLRMPKYFEEDNSVEEE 214
L+SHVLQ+R P+Y E+ V E
Sbjct: 506 LESHVLQIRRPEYVAEEKVVPIE 528
>At3g54780.1 68416.m06061 zinc finger (C3HC4-type RING finger)
family protein low similarity to SP|P79263
Inter-alpha-trypsin inhibitor heavy chain H4 precursor
{Sus scrofa}; contains Pfam profiles PF00097: Zinc
finger, C3HC4 type (RING finger), PF00092: von
Willebrand factor type A domain
Length = 675
Score = 28.3 bits (60), Expect = 6.2
Identities = 12/23 (52%), Positives = 16/23 (69%)
Frame = +2
Query: 146 LDSHVLQLRMPKYFEEDNSVEEE 214
L+SHVLQ+R P+Y E+ V E
Sbjct: 505 LESHVLQIRRPEYVAEEKVVPIE 527
>At1g32610.1 68414.m04024 hydroxyproline-rich glycoprotein family
protein
Length = 291
Score = 28.3 bits (60), Expect = 6.2
Identities = 12/37 (32%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
Frame = +2
Query: 401 PKTPNPTV-VGLSRPTMSNPAGRAITDGDVPGLTGPG 508
P++P+P + G+ P P + D PG+ GPG
Sbjct: 232 PRSPSPLLSTGVQYPPPLTPRNYTFSSMDQPGILGPG 268
>At3g10760.1 68416.m01295 myb family transcription factor contains
Pfam profile: PF00249 myb-like DNA-binding domain
Length = 335
Score = 27.9 bits (59), Expect = 8.2
Identities = 11/25 (44%), Positives = 17/25 (68%)
Frame = +1
Query: 424 GWSEPSHNEQSGWESNNGWGCPRTH 498
G+S P+ N Q G ++NG+G P T+
Sbjct: 254 GFSSPTSNGQFGSPTSNGFGSPTTN 278
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,545,020
Number of Sequences: 28952
Number of extensions: 294434
Number of successful extensions: 682
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 662
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 682
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1785055200
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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