Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30679
         (834 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC513.05 |ams1||alpha-mannosidase |Schizosaccharomyces pombe|c...    32   0.087
SPAPB24D3.10c |agl1|agl|alpha-glucosidase Agl1|Schizosaccharomyc...    29   0.81 
SPAC16.04 |dus3||tRNA dihydrouridine synthase Dus3 |Schizosaccha...    28   1.9  
SPCC736.15 |||protein kinase inhibitor |Schizosaccharomyces pomb...    27   4.3  
SPAC3C7.02c |||protein kinase inhibitor |Schizosaccharomyces pom...    26   7.6  

>SPAC513.05 |ams1||alpha-mannosidase |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1077

 Score = 32.3 bits (70), Expect = 0.087
 Identities = 21/53 (39%), Positives = 28/53 (52%), Gaps = 2/53 (3%)
 Frame = -2

Query: 791  LRPLKRGESTSGQMMRRSLLSCDESPILHQHQGR-PYKRNVSP-SRPSDTSTM 639
            L   K G ST G +MR SLL   + P  H   G+   +  V P S+P D+ST+
Sbjct: 909  LNDCKYGFSTHGNLMRLSLLRSPKQPDAHADMGKHTIRYAVYPHSKPLDSSTV 961


>SPAPB24D3.10c |agl1|agl|alpha-glucosidase Agl1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 969

 Score = 29.1 bits (62), Expect = 0.81
 Identities = 20/89 (22%), Positives = 38/89 (42%)
 Frame = +1

Query: 550 GRPFGLNVQLNYRDASGNAYQEAVYNQTLNIVEVSEGLDGETFLLYGLPWCWWSIGLSSQ 729
           G P  L+V   YR  +   YQ    +++ N V     L GE    YG  +    + ++ +
Sbjct: 44  GIPQRLSVYDPYRGVNCQGYQAVNISESQNGVTAYLALLGEPCYAYGTDYPLLFLNVTYE 103

Query: 730 DSKLLRIIWPDVDSPRFNGLKPVENWEQP 816
           ++  + I   D ++ +F      + W+ P
Sbjct: 104 EADRVHISIKDANNTQFQFTSRKDLWDAP 132


>SPAC16.04 |dus3||tRNA dihydrouridine synthase Dus3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 617

 Score = 27.9 bits (59), Expect = 1.9
 Identities = 11/23 (47%), Positives = 13/23 (56%)
 Frame = -2

Query: 461 SECSMCSPLDSGKMPPWILLHSL 393
           SE +MC PL  G  P W L+  L
Sbjct: 268 SEMAMCYPLMQGHQPEWALVRGL 290


>SPCC736.15 |||protein kinase inhibitor |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 351

 Score = 26.6 bits (56), Expect = 4.3
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = -3

Query: 742 EACCPATRAQYSTSTREDHIRGMSLHLD 659
           EA C    AQ S +TRE   + M+ +LD
Sbjct: 177 EAACLVAEAQLSNTTREKFKQAMTFNLD 204


>SPAC3C7.02c |||protein kinase inhibitor |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 383

 Score = 25.8 bits (54), Expect = 7.6
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = -3

Query: 742 EACCPATRAQYSTSTREDHIRGMSLHL 662
           EA C    AQ +  TRE+  R  +LH+
Sbjct: 176 EAACLVAEAQLTNITRENFKRAFTLHI 202


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,337,489
Number of Sequences: 5004
Number of extensions: 68069
Number of successful extensions: 153
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 147
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 153
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 410448950
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)