Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30679
         (834 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_1396 + 29855256-29855328,29856019-29856180,29856466-298565...    29   3.5  
01_06_0997 + 33676441-33676758,33678223-33678314,33678443-336785...    29   6.0  

>06_03_1396 +
           29855256-29855328,29856019-29856180,29856466-29856516,
           29857189-29857277,29857632-29857709,29857811-29858014,
           29858101-29858172,29858262-29858306
          Length = 257

 Score = 29.5 bits (63), Expect = 3.5
 Identities = 14/44 (31%), Positives = 21/44 (47%)
 Frame = +2

Query: 338 IQAGYPVEFFVGFINKGSVDYVVESMEASFRYPMDYTYYIQNFT 469
           + AG   E  VG  N+G     V ++ ++   P D+  Y QN T
Sbjct: 80  VLAGEETELLVGLQNEGESTLNVVAIHSTLHLPFDHKMYGQNLT 123


>01_06_0997 +
           33676441-33676758,33678223-33678314,33678443-33678540,
           33678824-33678979,33679106-33679731,33679826-33679896,
           33679987-33680241,33680337-33680454,33680595-33680766,
           33680854-33681395
          Length = 815

 Score = 28.7 bits (61), Expect = 6.0
 Identities = 12/22 (54%), Positives = 17/22 (77%)
 Frame = +1

Query: 691 LPWCWWSIGLSSQDSKLLRIIW 756
           L W WWSIG+S+ DS++L I +
Sbjct: 91  LVW-WWSIGVSAVDSQVLYIAY 111


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,802,089
Number of Sequences: 37544
Number of extensions: 447072
Number of successful extensions: 982
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 950
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 982
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2303447664
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)