Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30679
         (834 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_3675| Best HMM Match : TRAP_alpha (HMM E-Value=0)                   81   8e-16
SB_12334| Best HMM Match : 7tm_1 (HMM E-Value=0.35)                    30   2.0  
SB_45246| Best HMM Match : zf-MYND (HMM E-Value=0.19)                  29   3.5  
SB_53086| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.5  
SB_25361| Best HMM Match : Cadherin (HMM E-Value=0)                    28   8.1  
SB_50986| Best HMM Match : UDPG_MGDP_dh (HMM E-Value=0)                28   8.1  

>SB_3675| Best HMM Match : TRAP_alpha (HMM E-Value=0)
          Length = 667

 Score = 81.4 bits (192), Expect = 8e-16
 Identities = 32/59 (54%), Positives = 46/59 (77%)
 Frame = +1

Query: 511 TFAYSFIPNEAFAGRPFGLNVQLNYRDASGNAYQEAVYNQTLNIVEVSEGLDGETFLLY 687
           +F Y+F P+E+F GRPFGL++ L Y+D  G  Y++AV+N+T+ +VE  EG+DGETF LY
Sbjct: 218 SFEYAFRPHESFGGRPFGLSINLLYKDTDGKMYRDAVFNETVQLVESDEGMDGETFFLY 276



 Score = 76.2 bits (179), Expect = 3e-14
 Identities = 40/80 (50%), Positives = 46/80 (57%)
 Frame = +2

Query: 260 VKSSQDIDTTILFTKPVPSLGDLTFDIQAGYPVEFFVGFINKGSVDYVVESMEASFRYPM 439
           +K S D DT ILFTK             AG   +  V F N G  D++V+ MEAS RYP 
Sbjct: 140 LKPSPDADTVILFTKNTEQ------QFSAGLVSKCLVSFSNNGRNDFMVDMMEASLRYPQ 193

Query: 440 DYTYYIQNFTALPYNREVKP 499
           DY+YYIQNFTA  YN  VKP
Sbjct: 194 DYSYYIQNFTAFQYNTVVKP 213


>SB_12334| Best HMM Match : 7tm_1 (HMM E-Value=0.35)
          Length = 311

 Score = 30.3 bits (65), Expect = 2.0
 Identities = 13/36 (36%), Positives = 21/36 (58%)
 Frame = -2

Query: 803 FSTGLRPLKRGESTSGQMMRRSLLSCDESPILHQHQ 696
           F++  RPL    S+S Q + +SL +CD+  +   HQ
Sbjct: 212 FTSNERPLSTSASSSIQHLNKSLTNCDQDNVCCPHQ 247


>SB_45246| Best HMM Match : zf-MYND (HMM E-Value=0.19)
          Length = 1828

 Score = 29.5 bits (63), Expect = 3.5
 Identities = 20/67 (29%), Positives = 27/67 (40%), Gaps = 1/67 (1%)
 Frame = +2

Query: 284 TTILFTKPVPSLGDLTFDIQ-AGYPVEFFVGFINKGSVDYVVESMEASFRYPMDYTYYIQ 460
           TT+ FTK V    DL+ D    GY V   V            ++ E +   P+ YT  I+
Sbjct: 744 TTVRFTKGVARFTDLSIDTPGTGYVVNMTVSTTPSSMYHGTAQTEEITIEEPLLYTSRIE 803

Query: 461 NFTALPY 481
               L Y
Sbjct: 804 AILNLQY 810


>SB_53086| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 667

 Score = 29.5 bits (63), Expect = 3.5
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = -3

Query: 469 GEVLNVVCVVHWIAERCLH 413
           G  L V+C   W+ ERCLH
Sbjct: 142 GFTLQVICSQEWVRERCLH 160


>SB_25361| Best HMM Match : Cadherin (HMM E-Value=0)
          Length = 4833

 Score = 28.3 bits (60), Expect = 8.1
 Identities = 14/58 (24%), Positives = 26/58 (44%)
 Frame = +1

Query: 562  GLNVQLNYRDASGNAYQEAVYNQTLNIVEVSEGLDGETFLLYGLPWCWWSIGLSSQDS 735
            G+N ++ Y   +GN+      N     +  +  LD ET   + L    + +G+  +DS
Sbjct: 2021 GVNAEIRYAFVTGNSNNSFTINSITGRLRTARNLDRETTPRFTLEVLAYDLGVPRKDS 2078


>SB_50986| Best HMM Match : UDPG_MGDP_dh (HMM E-Value=0)
          Length = 354

 Score = 28.3 bits (60), Expect = 8.1
 Identities = 15/35 (42%), Positives = 21/35 (60%)
 Frame = -1

Query: 603 ISAGVSVIKLYI*SERSSSKSFIRYKGIGKGGSCF 499
           + A V+ +++ I S+     SFI Y G G GGSCF
Sbjct: 147 VGADVNNVRVGIGSDSRIGYSFI-YPGAGYGGSCF 180


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,879,404
Number of Sequences: 59808
Number of extensions: 514492
Number of successful extensions: 1220
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1130
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1219
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2347493764
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)