Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30679
(834 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
CR456961-1|CAG33242.1| 286|Homo sapiens SSR1 protein. 85 2e-16
BT007387-1|AAP36051.1| 286|Homo sapiens signal sequence recepto... 85 2e-16
BC007710-1|AAH07710.1| 286|Homo sapiens signal sequence recepto... 85 2e-16
AL139095-1|CAI16444.1| 286|Homo sapiens signal sequence recepto... 85 2e-16
AK222809-1|BAD96529.1| 286|Homo sapiens signal sequence recepto... 85 2e-16
AK222762-1|BAD96482.1| 286|Homo sapiens signal sequence recepto... 85 2e-16
AF156965-1|AAD48778.1| 286|Homo sapiens translocon-associated p... 85 2e-16
Z12830-1|CAA78290.1| 286|Homo sapiens SSR alpha subunit protein. 85 4e-16
AK075562-1|BAC11701.1| 259|Homo sapiens protein ( Homo sapiens ... 85 4e-16
>CR456961-1|CAG33242.1| 286|Homo sapiens SSR1 protein.
Length = 286
Score = 85.4 bits (202), Expect = 2e-16
Identities = 44/85 (51%), Positives = 57/85 (67%)
Frame = +2
Query: 254 GVVKSSQDIDTTILFTKPVPSLGDLTFDIQAGYPVEFFVGFINKGSVDYVVESMEASFRY 433
G ++S DTTILF K G+ D A V+F VGF NKG+ D++VES++ASFRY
Sbjct: 75 GEPEASPSADTTILFVK-----GE---DFPANNIVKFLVGFTNKGTEDFIVESLDASFRY 126
Query: 434 PMDYTYYIQNFTALPYNREVKPKQE 508
P DY +YIQNFTALP N V P+++
Sbjct: 127 PQDYQFYIQNFTALPLNTVVPPQRQ 151
Score = 84.6 bits (200), Expect = 4e-16
Identities = 34/59 (57%), Positives = 45/59 (76%)
Frame = +1
Query: 511 TFAYSFIPNEAFAGRPFGLNVQLNYRDASGNAYQEAVYNQTLNIVEVSEGLDGETFLLY 687
TF YSFIP E GRPFGL + LNY+D +GN +Q+AV+NQT+ ++E +GLDGET +Y
Sbjct: 153 TFEYSFIPAEPMGGRPFGLVINLNYKDLNGNVFQDAVFNQTVTVIEREDGLDGETIFMY 211
>BT007387-1|AAP36051.1| 286|Homo sapiens signal sequence receptor,
alpha (translocon-associated protein alpha) protein.
Length = 286
Score = 85.4 bits (202), Expect = 2e-16
Identities = 44/85 (51%), Positives = 57/85 (67%)
Frame = +2
Query: 254 GVVKSSQDIDTTILFTKPVPSLGDLTFDIQAGYPVEFFVGFINKGSVDYVVESMEASFRY 433
G ++S DTTILF K G+ D A V+F VGF NKG+ D++VES++ASFRY
Sbjct: 75 GEPEASPSADTTILFVK-----GE---DFPANNIVKFLVGFTNKGTEDFIVESLDASFRY 126
Query: 434 PMDYTYYIQNFTALPYNREVKPKQE 508
P DY +YIQNFTALP N V P+++
Sbjct: 127 PQDYQFYIQNFTALPLNTVVPPQRQ 151
Score = 84.6 bits (200), Expect = 4e-16
Identities = 34/59 (57%), Positives = 45/59 (76%)
Frame = +1
Query: 511 TFAYSFIPNEAFAGRPFGLNVQLNYRDASGNAYQEAVYNQTLNIVEVSEGLDGETFLLY 687
TF YSFIP E GRPFGL + LNY+D +GN +Q+AV+NQT+ ++E +GLDGET +Y
Sbjct: 153 TFEYSFIPAEPMGGRPFGLVINLNYKDLNGNVFQDAVFNQTVTVIEREDGLDGETIFMY 211
>BC007710-1|AAH07710.1| 286|Homo sapiens signal sequence receptor,
alpha (translocon-associated protein alpha) protein.
Length = 286
Score = 85.4 bits (202), Expect = 2e-16
Identities = 44/85 (51%), Positives = 57/85 (67%)
Frame = +2
Query: 254 GVVKSSQDIDTTILFTKPVPSLGDLTFDIQAGYPVEFFVGFINKGSVDYVVESMEASFRY 433
G ++S DTTILF K G+ D A V+F VGF NKG+ D++VES++ASFRY
Sbjct: 75 GEPEASPSADTTILFVK-----GE---DFPANNIVKFLVGFTNKGTEDFIVESLDASFRY 126
Query: 434 PMDYTYYIQNFTALPYNREVKPKQE 508
P DY +YIQNFTALP N V P+++
Sbjct: 127 PQDYQFYIQNFTALPLNTVVPPQRQ 151
Score = 84.6 bits (200), Expect = 4e-16
Identities = 34/59 (57%), Positives = 45/59 (76%)
Frame = +1
Query: 511 TFAYSFIPNEAFAGRPFGLNVQLNYRDASGNAYQEAVYNQTLNIVEVSEGLDGETFLLY 687
TF YSFIP E GRPFGL + LNY+D +GN +Q+AV+NQT+ ++E +GLDGET +Y
Sbjct: 153 TFEYSFIPAEPMGGRPFGLVINLNYKDLNGNVFQDAVFNQTVTVIEREDGLDGETIFMY 211
>AL139095-1|CAI16444.1| 286|Homo sapiens signal sequence receptor,
alpha (translocon-associated protein alpha) protein.
Length = 286
Score = 85.4 bits (202), Expect = 2e-16
Identities = 44/85 (51%), Positives = 57/85 (67%)
Frame = +2
Query: 254 GVVKSSQDIDTTILFTKPVPSLGDLTFDIQAGYPVEFFVGFINKGSVDYVVESMEASFRY 433
G ++S DTTILF K G+ D A V+F VGF NKG+ D++VES++ASFRY
Sbjct: 75 GEPEASPSADTTILFVK-----GE---DFPANNIVKFLVGFTNKGTEDFIVESLDASFRY 126
Query: 434 PMDYTYYIQNFTALPYNREVKPKQE 508
P DY +YIQNFTALP N V P+++
Sbjct: 127 PQDYQFYIQNFTALPLNTVVPPQRQ 151
Score = 84.6 bits (200), Expect = 4e-16
Identities = 34/59 (57%), Positives = 45/59 (76%)
Frame = +1
Query: 511 TFAYSFIPNEAFAGRPFGLNVQLNYRDASGNAYQEAVYNQTLNIVEVSEGLDGETFLLY 687
TF YSFIP E GRPFGL + LNY+D +GN +Q+AV+NQT+ ++E +GLDGET +Y
Sbjct: 153 TFEYSFIPAEPMGGRPFGLVINLNYKDLNGNVFQDAVFNQTVTVIEREDGLDGETIFMY 211
>AK222809-1|BAD96529.1| 286|Homo sapiens signal sequence receptor,
alpha variant protein.
Length = 286
Score = 85.4 bits (202), Expect = 2e-16
Identities = 44/85 (51%), Positives = 57/85 (67%)
Frame = +2
Query: 254 GVVKSSQDIDTTILFTKPVPSLGDLTFDIQAGYPVEFFVGFINKGSVDYVVESMEASFRY 433
G ++S DTTILF K G+ D A V+F VGF NKG+ D++VES++ASFRY
Sbjct: 75 GEPEASPSADTTILFVK-----GE---DFPANNIVKFLVGFTNKGTEDFIVESLDASFRY 126
Query: 434 PMDYTYYIQNFTALPYNREVKPKQE 508
P DY +YIQNFTALP N V P+++
Sbjct: 127 PQDYQFYIQNFTALPLNTVVPPQRQ 151
Score = 84.6 bits (200), Expect = 4e-16
Identities = 34/59 (57%), Positives = 45/59 (76%)
Frame = +1
Query: 511 TFAYSFIPNEAFAGRPFGLNVQLNYRDASGNAYQEAVYNQTLNIVEVSEGLDGETFLLY 687
TF YSFIP E GRPFGL + LNY+D +GN +Q+AV+NQT+ ++E +GLDGET +Y
Sbjct: 153 TFEYSFIPAEPMGGRPFGLVINLNYKDLNGNVFQDAVFNQTVTVIEREDGLDGETIFMY 211
>AK222762-1|BAD96482.1| 286|Homo sapiens signal sequence receptor,
alpha variant protein.
Length = 286
Score = 85.4 bits (202), Expect = 2e-16
Identities = 44/85 (51%), Positives = 57/85 (67%)
Frame = +2
Query: 254 GVVKSSQDIDTTILFTKPVPSLGDLTFDIQAGYPVEFFVGFINKGSVDYVVESMEASFRY 433
G ++S DTTILF K G+ D A V+F VGF NKG+ D++VES++ASFRY
Sbjct: 75 GEPEASPSADTTILFVK-----GE---DFPANNIVKFLVGFTNKGTEDFIVESLDASFRY 126
Query: 434 PMDYTYYIQNFTALPYNREVKPKQE 508
P DY +YIQNFTALP N V P+++
Sbjct: 127 PQDYQFYIQNFTALPLNTVVPPQRQ 151
Score = 84.6 bits (200), Expect = 4e-16
Identities = 34/59 (57%), Positives = 45/59 (76%)
Frame = +1
Query: 511 TFAYSFIPNEAFAGRPFGLNVQLNYRDASGNAYQEAVYNQTLNIVEVSEGLDGETFLLY 687
TF YSFIP E GRPFGL + LNY+D +GN +Q+AV+NQT+ ++E +GLDGET +Y
Sbjct: 153 TFEYSFIPAEPMGGRPFGLVINLNYKDLNGNVFQDAVFNQTVTVIEREDGLDGETIFMY 211
>AF156965-1|AAD48778.1| 286|Homo sapiens translocon-associated
protein alpha subunit protein.
Length = 286
Score = 85.4 bits (202), Expect = 2e-16
Identities = 44/85 (51%), Positives = 57/85 (67%)
Frame = +2
Query: 254 GVVKSSQDIDTTILFTKPVPSLGDLTFDIQAGYPVEFFVGFINKGSVDYVVESMEASFRY 433
G ++S DTTILF K G+ D A V+F VGF NKG+ D++VES++ASFRY
Sbjct: 75 GEPEASPSADTTILFVK-----GE---DFPANNIVKFLVGFTNKGTEDFIVESLDASFRY 126
Query: 434 PMDYTYYIQNFTALPYNREVKPKQE 508
P DY +YIQNFTALP N V P+++
Sbjct: 127 PQDYQFYIQNFTALPLNTVVPPQRQ 151
Score = 84.6 bits (200), Expect = 4e-16
Identities = 34/59 (57%), Positives = 45/59 (76%)
Frame = +1
Query: 511 TFAYSFIPNEAFAGRPFGLNVQLNYRDASGNAYQEAVYNQTLNIVEVSEGLDGETFLLY 687
TF YSFIP E GRPFGL + LNY+D +GN +Q+AV+NQT+ ++E +GLDGET +Y
Sbjct: 153 TFEYSFIPAEPMGGRPFGLVINLNYKDLNGNVFQDAVFNQTVTVIEREDGLDGETIFMY 211
>Z12830-1|CAA78290.1| 286|Homo sapiens SSR alpha subunit protein.
Length = 286
Score = 84.6 bits (200), Expect = 4e-16
Identities = 34/59 (57%), Positives = 45/59 (76%)
Frame = +1
Query: 511 TFAYSFIPNEAFAGRPFGLNVQLNYRDASGNAYQEAVYNQTLNIVEVSEGLDGETFLLY 687
TF YSFIP E GRPFGL + LNY+D +GN +Q+AV+NQT+ ++E +GLDGET +Y
Sbjct: 153 TFEYSFIPAEPMGGRPFGLVINLNYKDLNGNVFQDAVFNQTVTVIEREDGLDGETIFMY 211
Score = 83.4 bits (197), Expect = 9e-16
Identities = 43/85 (50%), Positives = 57/85 (67%)
Frame = +2
Query: 254 GVVKSSQDIDTTILFTKPVPSLGDLTFDIQAGYPVEFFVGFINKGSVDYVVESMEASFRY 433
G ++S DTTILF K G+ D A V+F VGF NKG+ D++VES++ASFRY
Sbjct: 75 GEPEASPSADTTILFVK-----GE---DFPANNIVKFLVGFTNKGTEDFIVESLDASFRY 126
Query: 434 PMDYTYYIQNFTALPYNREVKPKQE 508
P D+ +YIQNFTALP N V P+++
Sbjct: 127 PQDHQFYIQNFTALPLNTVVPPQRQ 151
>AK075562-1|BAC11701.1| 259|Homo sapiens protein ( Homo sapiens
cDNA PSEC0262 fis, clone NT2RP3004505, highly similar to
TRANSLOCON-ASSOCIATED PROTEIN, ALPHA SUBUNIT PRECURSOR.
).
Length = 259
Score = 84.6 bits (200), Expect = 4e-16
Identities = 34/59 (57%), Positives = 45/59 (76%)
Frame = +1
Query: 511 TFAYSFIPNEAFAGRPFGLNVQLNYRDASGNAYQEAVYNQTLNIVEVSEGLDGETFLLY 687
TF YSFIP E GRPFGL + LNY+D +GN +Q+AV+NQT+ ++E +GLDGET +Y
Sbjct: 126 TFEYSFIPAEPMGGRPFGLVINLNYKDLNGNVFQDAVFNQTVTVIEREDGLDGETIFMY 184
Score = 82.2 bits (194), Expect = 2e-15
Identities = 36/62 (58%), Positives = 46/62 (74%)
Frame = +2
Query: 323 DLTFDIQAGYPVEFFVGFINKGSVDYVVESMEASFRYPMDYTYYIQNFTALPYNREVKPK 502
DL D A V+F VGF NKG+ D++VES++ASFRYP DY +YIQNFTALP N V P+
Sbjct: 63 DLVEDFPANNIVKFLVGFTNKGTEDFIVESLDASFRYPQDYQFYIQNFTALPLNTVVPPQ 122
Query: 503 QE 508
++
Sbjct: 123 RQ 124
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 120,501,564
Number of Sequences: 237096
Number of extensions: 2569806
Number of successful extensions: 4615
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 4440
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4607
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 10482413384
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -