Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30679
         (834 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024852-1|AAK66027.1|  257|Caenorhabditis elegans Hypothetical ...    75   8e-14

>AC024852-1|AAK66027.1|  257|Caenorhabditis elegans Hypothetical
           protein Y71F9AM.6 protein.
          Length = 257

 Score = 74.5 bits (175), Expect = 8e-14
 Identities = 33/76 (43%), Positives = 48/76 (63%)
 Frame = +2

Query: 281 DTTILFTKPVPSLGDLTFDIQAGYPVEFFVGFINKGSVDYVVESMEASFRYPMDYTYYIQ 460
           D  + F    PS  ++  +   G PV++ +GF NKG  D+VV+  E SFR+P D++Y++Q
Sbjct: 48  DAGLAFHFVQPSDANVVREFYTGKPVKYLIGFQNKGEKDFVVKYAETSFRFPTDHSYHLQ 107

Query: 461 NFTALPYNREVKPKQE 508
           NFT   YNR V PK+E
Sbjct: 108 NFTRGEYNRRVAPKEE 123



 Score = 68.9 bits (161), Expect = 4e-12
 Identities = 36/88 (40%), Positives = 47/88 (53%)
 Frame = +1

Query: 424 FPLSNGLHILHSELHRVAL*QRS*AKTGTTFAYSFIPNEAFAGRPFGLNVQLNYRDASGN 603
           FP  +  H+      R    +R   K   T  Y F  +E FAGRP GL V ++Y+DA GN
Sbjct: 98  FPTDHSYHL--QNFTRGEYNRRVAPKEEVTLDYGFYAHETFAGRPVGLVVNVHYQDADGN 155

Query: 604 AYQEAVYNQTLNIVEVSEGLDGETFLLY 687
            +   VYNQT+NI+E   G  GET  L+
Sbjct: 156 VFVNNVYNQTINIMEDDSGFSGETGFLF 183


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,499,920
Number of Sequences: 27780
Number of extensions: 384514
Number of successful extensions: 948
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 835
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 948
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 2072006206
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)