Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30679
         (834 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB208107-1|BAE72139.1|   71|Apis mellifera Broad complex zinc fi...    23   2.6  
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              23   3.5  
DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related pro...    22   6.1  

>AB208107-1|BAE72139.1|   71|Apis mellifera Broad complex zinc
           finger domain-Z2 isoform protein.
          Length = 71

 Score = 23.4 bits (48), Expect = 2.6
 Identities = 10/29 (34%), Positives = 16/29 (55%)
 Frame = +3

Query: 447 HTTFRTSPRCLITEKLSQNRNHLCLFLYT 533
           H   +   RC+I E++  +RN L   +YT
Sbjct: 29  HAERQEEYRCVICERVYCSRNSLMTHIYT 57


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 23.0 bits (47), Expect = 3.5
 Identities = 10/28 (35%), Positives = 14/28 (50%)
 Frame = +1

Query: 394 RLCSRIHGGIFPLSNGLHILHSELHRVA 477
           R C R H  +   +  ++  H ELHR A
Sbjct: 108 RKCPRRHRPVCASNGKIYANHCELHRAA 135


>DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related
           protein STG-1 protein.
          Length = 397

 Score = 22.2 bits (45), Expect = 6.1
 Identities = 13/31 (41%), Positives = 17/31 (54%)
 Frame = -1

Query: 660 TFRYFHNVQCLVVDGFLVSISAGVSVIKLYI 568
           T+RY  +   L V GF+ +  AG   I LYI
Sbjct: 224 TYRYGFSF-LLYVSGFITTEVAGTYAIFLYI 253


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 227,036
Number of Sequences: 438
Number of extensions: 5059
Number of successful extensions: 9
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 26702940
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)