Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30679
         (834 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g21160.1 68415.m02510 translocon-associated protein alpha (TR...    34   0.13 
At4g16130.1 68417.m02444 GHMP kinase family protein contains GHM...    28   6.6  
At3g47150.1 68416.m05119 F-box family protein various predicted ...    28   6.6  
At3g49900.1 68416.m05455 BTB/POZ domain-containing protein conta...    28   8.8  

>At2g21160.1 68415.m02510 translocon-associated protein alpha (TRAP
           alpha) family protein contains Pfam profile: PF03896
           translocon-associated protein (TRAP), alpha subunit
          Length = 258

 Score = 33.9 bits (74), Expect = 0.13
 Identities = 18/54 (33%), Positives = 23/54 (42%)
 Frame = +2

Query: 338 IQAGYPVEFFVGFINKGSVDYVVESMEASFRYPMDYTYYIQNFTALPYNREVKP 499
           + AG   E  VG  N+G     V  + AS   P D+   +QN T L  N    P
Sbjct: 78  VPAGEETELLVGLKNEGKTRVGVMGIRASVHLPYDHKLLVQNLTMLRLNNASIP 131



 Score = 33.9 bits (74), Expect = 0.13
 Identities = 21/61 (34%), Positives = 27/61 (44%)
 Frame = +1

Query: 511 TFAYSFIPNEAFAGRPFGLNVQLNYRDASGNAYQEAVYNQTLNIVEVSEGLDGETFLLYG 690
           TF Y F  ++      F L   + Y D  G  YQ   YN T+ +VE    L GE+  L  
Sbjct: 137 TFPYIFAVSQYLQPGAFDLVGYIIY-DVEGKPYQSVFYNGTIEVVESGGLLSGESVFLLT 195

Query: 691 L 693
           L
Sbjct: 196 L 196


>At4g16130.1 68417.m02444 GHMP kinase family protein contains GHMP
           kinases putative ATP-binding protein domain,
           Pfam:PF00288
          Length = 1039

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 13/28 (46%), Positives = 16/28 (57%)
 Frame = -3

Query: 673 SLHLDLQILPQCSVSGCRRLPGKHFRWR 590
           SL L + I   C V+  R LPGKH  W+
Sbjct: 570 SLVLQMPIREACHVAVQRNLPGKHRLWK 597


>At3g47150.1 68416.m05119 F-box family protein various predicted
           proteins, Arabidopsis thaliana
          Length = 360

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 14/35 (40%), Positives = 19/35 (54%)
 Frame = +3

Query: 426 SAIQWTTHTTFRTSPRCLITEKLSQNRNHLCLFLY 530
           S + +    TF T   CL+TEK+S   +  CLF Y
Sbjct: 288 SGLDFKVMNTFYTGEICLVTEKIS---DPFCLFYY 319


>At3g49900.1 68416.m05455 BTB/POZ domain-containing protein contains
           BTB/POZ domain, INTERPRO:IPR000210
          Length = 517

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 9/22 (40%), Positives = 17/22 (77%)
 Frame = -2

Query: 449 MCSPLDSGKMPPWILLHSLRNP 384
           +C+ +D  K+ P +LLH+++NP
Sbjct: 269 ICNSIDCDKLSPPLLLHAVQNP 290


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,514,056
Number of Sequences: 28952
Number of extensions: 360958
Number of successful extensions: 857
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 839
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 857
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1921616800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)