Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30677
         (483 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC23G7.15c |rpp202|rpp2-2|60S acidic ribosomal protein P2B sub...    93   3e-20
SPBP8B7.06 |rpp201|rpp2, rpp2-1|60S acidic ribosomal protein P2A...    92   5e-20
SPAC1071.08 |rpp203|rpp2-3, rla6|60S acidic ribosomal protein P2...    88   6e-19
SPAC11G7.01 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    27   1.1  
SPAC222.10c |byr4||two-component GAP Byr4|Schizosaccharomyces po...    27   1.5  
SPBP19A11.02c |||sequence orphan|Schizosaccharomyces pombe|chr 2...    27   1.5  
SPAC19E9.02 |fin1||serine/threonine protein kinase Fin1|Schizosa...    27   1.5  
SPBC359.04c |||DIPSY family|Schizosaccharomyces pombe|chr 2|||Ma...    27   2.0  
SPBC12C2.10c |pst1|SPBC21D10.01c|Clr6 histone deacetylase comple...    27   2.0  
SPAC11D3.07c |||transcription factor|Schizosaccharomyces pombe|c...    26   3.4  
SPBC1652.01 |||conserved fungal protein|Schizosaccharomyces pomb...    26   3.4  
SPCC285.13c |||nucleoporin Nup60 |Schizosaccharomyces pombe|chr ...    25   4.5  
SPBC660.08 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    25   4.5  
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1...    25   7.9  
SPAC1F8.06 |fta5|sma5|Sim4 and Mal2 associated |Schizosaccharomy...    25   7.9  

>SPBC23G7.15c |rpp202|rpp2-2|60S acidic ribosomal protein P2B
           subunit|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 110

 Score = 92.7 bits (220), Expect = 3e-20
 Identities = 39/66 (59%), Positives = 59/66 (89%)
 Frame = +2

Query: 53  MRYVAAYLLAVLGGKTTPAAADVEKILSSVGIEADGEKLKKVITELNGKDVEQLIAAGRE 232
           M+Y+AAYLL  +GGK +P+A+D+E +LS+VGIEA+ E+++ +I+ELNGK++E+LIAAG E
Sbjct: 1   MKYLAAYLLLTVGGKQSPSASDIESVLSTVGIEAEAERVESLISELNGKNIEELIAAGNE 60

Query: 233 KLSSMP 250
           KLS++P
Sbjct: 61  KLSTVP 66


>SPBP8B7.06 |rpp201|rpp2, rpp2-1|60S acidic ribosomal protein P2A
           subunit|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 110

 Score = 91.9 bits (218), Expect = 5e-20
 Identities = 38/66 (57%), Positives = 58/66 (87%)
 Frame = +2

Query: 53  MRYVAAYLLAVLGGKTTPAAADVEKILSSVGIEADGEKLKKVITELNGKDVEQLIAAGRE 232
           M+Y+AAYLL  +GGK +P+A+D+E +LS+VGIEA+ E+++ +I ELNGKD+++LIAAG E
Sbjct: 1   MKYLAAYLLLTVGGKDSPSASDIESVLSTVGIEAESERIETLINELNGKDIDELIAAGNE 60

Query: 233 KLSSMP 250
           KL+++P
Sbjct: 61  KLATVP 66


>SPAC1071.08 |rpp203|rpp2-3, rla6|60S acidic ribosomal protein P2C
           subunit|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 110

 Score = 88.2 bits (209), Expect = 6e-19
 Identities = 36/66 (54%), Positives = 58/66 (87%)
 Frame = +2

Query: 53  MRYVAAYLLAVLGGKTTPAAADVEKILSSVGIEADGEKLKKVITELNGKDVEQLIAAGRE 232
           M+Y+AAYLL  +GGK +P+A+D+E +LS+VGIE++ E+++ +I EL+GKD+++LIAAG E
Sbjct: 1   MKYLAAYLLLTVGGKNSPSASDIESVLSTVGIESESERVEALIKELDGKDIDELIAAGNE 60

Query: 233 KLSSMP 250
           KL+++P
Sbjct: 61  KLATVP 66


>SPAC11G7.01 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 536

 Score = 27.5 bits (58), Expect = 1.1
 Identities = 18/45 (40%), Positives = 28/45 (62%), Gaps = 2/45 (4%)
 Frame = -1

Query: 189 SSVITFLSFSPSASIP--TELRIFSTSAAAGVVLPPSTASKYAAT 61
           SSV T LS S S+SIP  +     STS ++  V+P S++S  +++
Sbjct: 8   SSVDTSLSSSASSSIPASSSSAAASTSLSSSSVIPSSSSSMLSSS 52



 Score = 25.8 bits (54), Expect = 3.4
 Identities = 22/65 (33%), Positives = 34/65 (52%)
 Frame = -1

Query: 261 SASTGIDDSFSRPAAISCSTSLPLSSVITFLSFSPSASIPTELRIFSTSAAAGVVLPPST 82
           S+S     SF+ PA+ S  TSL  SS     S S S +  +   + S+S+A+    P S+
Sbjct: 62  SSSPLSSSSFTSPASSSFITSLVSSSSQQSSSSSASLTSSSSATLTSSSSAS----PTSS 117

Query: 81  ASKYA 67
           +S +A
Sbjct: 118 SSSHA 122


>SPAC222.10c |byr4||two-component GAP Byr4|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 665

 Score = 27.1 bits (57), Expect = 1.5
 Identities = 14/27 (51%), Positives = 17/27 (62%)
 Frame = -1

Query: 261 SASTGIDDSFSRPAAISCSTSLPLSSV 181
           SAST +DD FS   +IS   SL +S V
Sbjct: 31  SASTSVDDGFSFDDSISRLNSLSISDV 57


>SPBP19A11.02c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 244

 Score = 27.1 bits (57), Expect = 1.5
 Identities = 22/67 (32%), Positives = 32/67 (47%), Gaps = 1/67 (1%)
 Frame = -1

Query: 258 ASTGIDDSFSRPAAISCS-TSLPLSSVITFLSFSPSASIPTELRIFSTSAAAGVVLPPST 82
           A T     F+   A + + T LP ++V T  SFS SAS  T     +++    +V PPST
Sbjct: 18  AQTEYTPGFTTDVATTVTPTPLPSANVTT-TSFS-SASTETSTHSVTSTNITSIVPPPST 75

Query: 81  ASKYAAT 61
           +     T
Sbjct: 76  SHNSTTT 82


>SPAC19E9.02 |fin1||serine/threonine protein kinase
           Fin1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 722

 Score = 27.1 bits (57), Expect = 1.5
 Identities = 15/45 (33%), Positives = 23/45 (51%)
 Frame = -1

Query: 204 TSLPLSSVITFLSFSPSASIPTELRIFSTSAAAGVVLPPSTASKY 70
           + L + S  T +S S   S+PT+  +  T + +  V PPS  S Y
Sbjct: 526 SKLSVESDETAVSASSGESVPTDSTLTDTKSKSVFVHPPSPQSLY 570


>SPBC359.04c |||DIPSY family|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 358

 Score = 26.6 bits (56), Expect = 2.0
 Identities = 17/62 (27%), Positives = 32/62 (51%)
 Frame = -1

Query: 261 SASTGIDDSFSRPAAISCSTSLPLSSVITFLSFSPSASIPTELRIFSTSAAAGVVLPPST 82
           +++T  +  ++   ++S S+ L  S++ T  S   +AS+PT   I S S        P+T
Sbjct: 65  ASNTSENYPYTGSKSLSSSSILSNSTISTSSSTPITASVPTSSSILSNSTIPTTSPVPTT 124

Query: 81  AS 76
           +S
Sbjct: 125 SS 126


>SPBC12C2.10c |pst1|SPBC21D10.01c|Clr6 histone deacetylase complex
            subunit Pst1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1522

 Score = 26.6 bits (56), Expect = 2.0
 Identities = 14/55 (25%), Positives = 30/55 (54%), Gaps = 1/55 (1%)
 Frame = +2

Query: 50   KMRYVAAYLLAVLGGKTTPAAADVEKILSSVGIEADGEKLKKVITEL-NGKDVEQ 211
            K+R +    +  L  ++T  +   E+   + G+E+ G+K K ++ E  NGK +++
Sbjct: 1323 KVRRIKPCTIESLFNESTLRSGKAERFSENAGVESIGKKGKNLLNESGNGKKLDK 1377


>SPAC11D3.07c |||transcription factor|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 603

 Score = 25.8 bits (54), Expect = 3.4
 Identities = 6/15 (40%), Positives = 12/15 (80%)
 Frame = +3

Query: 48  KKCVTWPRIYWLCWV 92
           +K  +W RI+W+C++
Sbjct: 299 EKAESWKRIFWMCYI 313


>SPBC1652.01 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 386

 Score = 25.8 bits (54), Expect = 3.4
 Identities = 16/49 (32%), Positives = 22/49 (44%)
 Frame = +3

Query: 48  KKCVTWPRIYWLCWVARPRQLPLTLRRSSAPSVSKLTVRSLRK*SLSST 194
           KK + + +I W  WV R   +P      S PS S      L   SLS++
Sbjct: 161 KKGIQFEKIGWGRWVLRDSTIPANSHPQSLPSNSIPKTEPLDTPSLSNS 209


>SPCC285.13c |||nucleoporin Nup60 |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 736

 Score = 25.4 bits (53), Expect = 4.5
 Identities = 15/53 (28%), Positives = 28/53 (52%)
 Frame = -1

Query: 237 SFSRPAAISCSTSLPLSSVITFLSFSPSASIPTELRIFSTSAAAGVVLPPSTA 79
           SF  P+A +   S P+SS+ +F + S +++ P+     + S  A    P +T+
Sbjct: 451 SFKAPSATTDKPSPPVSSIFSFNAPSAASTKPSPAVSSTFSFNAPTTTPSATS 503


>SPBC660.08 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 395

 Score = 25.4 bits (53), Expect = 4.5
 Identities = 12/17 (70%), Positives = 13/17 (76%)
 Frame = +2

Query: 386 TKLYKSTRRWSLFQFMF 436
           TKL K TRR SLF+F F
Sbjct: 317 TKLMKYTRRKSLFRFPF 333


>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 800

 Score = 24.6 bits (51), Expect = 7.9
 Identities = 16/55 (29%), Positives = 25/55 (45%)
 Frame = -1

Query: 225 PAAISCSTSLPLSSVITFLSFSPSASIPTELRIFSTSAAAGVVLPPSTASKYAAT 61
           P   + STS+P+    T  + + S+ +PT     STS      +PP+  S    T
Sbjct: 252 PPTSTSSTSIPIPPTSTSSTDTNSSPLPTT----STSCTTSTSIPPTGNSTTPVT 302


>SPAC1F8.06 |fta5|sma5|Sim4 and Mal2 associated |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 385

 Score = 24.6 bits (51), Expect = 7.9
 Identities = 20/67 (29%), Positives = 35/67 (52%)
 Frame = -1

Query: 261 SASTGIDDSFSRPAAISCSTSLPLSSVITFLSFSPSASIPTELRIFSTSAAAGVVLPPST 82
           S    I  S S  +  S S+S+P+++V +  SF PS+S   +    S+S    V++  S 
Sbjct: 75  SGQLSISSSSSTSSEYS-SSSIPITTVSSSDSFIPSSS---QTISASSSTTDNVIVSSSI 130

Query: 81  ASKYAAT 61
           +S  ++T
Sbjct: 131 SSTVSST 137


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,466,642
Number of Sequences: 5004
Number of extensions: 21660
Number of successful extensions: 88
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 81
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 88
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 186042952
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)