Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30677
(483 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_05_0028 + 21691137-21691224,21691539-21691765,21692135-21692161 87 7e-18
02_04_0074 - 19474786-19474812,19475174-19475400,19476362-194764... 73 9e-14
01_01_0642 + 4852218-4852305,4852655-4852884,4853103-4853129 73 9e-14
07_01_1001 - 8460467-8460799 64 7e-11
07_03_0321 + 16757414-16757743 63 1e-10
01_06_0098 - 26416768-26416998 31 0.37
08_02_1093 - 24271826-24273427 30 1.1
12_02_1217 + 27082452-27083593,27085041-27085158 29 1.5
11_01_0139 - 1159748-1160173,1160229-1160301,1161600-1161877 29 2.0
12_01_0140 - 1088400-1088843 29 2.6
05_01_0120 - 828834-831143 28 3.4
10_08_0104 + 14824122-14824178,14824274-14824318,14824419-148245... 28 4.5
09_02_0080 - 4020020-4020047,4020160-4022044,4022079-4022817 28 4.5
03_03_0256 + 15898702-15900420 28 4.5
01_07_0053 + 40772966-40773080,40773484-40773578,40773730-407738... 28 4.5
12_01_0141 - 1091579-1091983 27 6.0
03_02_0539 - 9329572-9330729,9330988-9331041 27 6.0
01_01_1092 - 8593414-8593776,8597750-8597931,8598080-8598152 27 6.0
08_01_0152 - 1190358-1190462,1190648-1190765,1191134-1192691,119... 27 7.9
04_04_1284 + 32376870-32376874,32376876-32376935,32377166-323773... 27 7.9
>05_05_0028 + 21691137-21691224,21691539-21691765,21692135-21692161
Length = 113
Score = 87.0 bits (206), Expect = 7e-18
Identities = 38/66 (57%), Positives = 56/66 (84%)
Frame = +2
Query: 53 MRYVAAYLLAVLGGKTTPAAADVEKILSSVGIEADGEKLKKVITELNGKDVEQLIAAGRE 232
M+ +AAYLLAVLGG T+P+A D++ IL SVG+EA+ E+L+ +++EL GKD+ ++IAAGRE
Sbjct: 1 MKLIAAYLLAVLGGNTSPSADDIKNILESVGVEANDERLEFLLSELEGKDITEVIAAGRE 60
Query: 233 KLSSMP 250
K +S+P
Sbjct: 61 KFASVP 66
>02_04_0074 -
19474786-19474812,19475174-19475400,19476362-19476496,
19478662-19479193
Length = 306
Score = 73.3 bits (172), Expect = 9e-14
Identities = 31/67 (46%), Positives = 50/67 (74%)
Frame = +2
Query: 50 KMRYVAAYLLAVLGGKTTPAAADVEKILSSVGIEADGEKLKKVITELNGKDVEQLIAAGR 229
+M++++AYLLA L G P+A D+ IL SVG E D K++ ++++L GKD+ ++IA+GR
Sbjct: 193 RMKFISAYLLATLAGNPNPSAEDLTTILESVGAEVDHGKMELLLSQLAGKDITEIIASGR 252
Query: 230 EKLSSMP 250
EK +S+P
Sbjct: 253 EKFASVP 259
>01_01_0642 + 4852218-4852305,4852655-4852884,4853103-4853129
Length = 114
Score = 73.3 bits (172), Expect = 9e-14
Identities = 30/66 (45%), Positives = 50/66 (75%)
Frame = +2
Query: 53 MRYVAAYLLAVLGGKTTPAAADVEKILSSVGIEADGEKLKKVITELNGKDVEQLIAAGRE 232
M++++AYL+A L G ++P A D+ IL SVG E D K++ ++++++GKD+ +LIA GRE
Sbjct: 1 MKFISAYLMAYLAGNSSPTAEDLTTILESVGCEIDNAKMELLLSQVSGKDITELIACGRE 60
Query: 233 KLSSMP 250
K +S+P
Sbjct: 61 KFASVP 66
>07_01_1001 - 8460467-8460799
Length = 110
Score = 63.7 bits (148), Expect = 7e-11
Identities = 28/63 (44%), Positives = 43/63 (68%)
Frame = +2
Query: 53 MRYVAAYLLAVLGGKTTPAAADVEKILSSVGIEADGEKLKKVITELNGKDVEQLIAAGRE 232
MR+VAAYL+A +GG +P DV IL +VG + D +KL + ++ GKD+ +++AAG E
Sbjct: 1 MRFVAAYLMATIGGNASPTKDDVRAILGAVGADVDEDKLGYLFDQVAGKDLSEILAAGSE 60
Query: 233 KLS 241
L+
Sbjct: 61 MLA 63
>07_03_0321 + 16757414-16757743
Length = 109
Score = 62.9 bits (146), Expect = 1e-10
Identities = 28/63 (44%), Positives = 43/63 (68%)
Frame = +2
Query: 53 MRYVAAYLLAVLGGKTTPAAADVEKILSSVGIEADGEKLKKVITELNGKDVEQLIAAGRE 232
MR+VAAYL+A +GG +P DV IL +VG + D +KL + ++ GKD+ +++AAG E
Sbjct: 1 MRFVAAYLMATIGGNASPTKDDVRAILGAVGADIDEDKLGYLFDQVAGKDLAEILAAGSE 60
Query: 233 KLS 241
L+
Sbjct: 61 MLA 63
>01_06_0098 - 26416768-26416998
Length = 76
Score = 31.5 bits (68), Expect = 0.37
Identities = 14/33 (42%), Positives = 19/33 (57%)
Frame = +2
Query: 104 PAAADVEKILSSVGIEADGEKLKKVITELNGKD 202
P V KI+ +V IEAD + K ++ L GKD
Sbjct: 16 PPPPAVVKIIETVHIEADSAEFKSIVQRLTGKD 48
>08_02_1093 - 24271826-24273427
Length = 533
Score = 29.9 bits (64), Expect = 1.1
Identities = 18/60 (30%), Positives = 28/60 (46%)
Frame = +2
Query: 50 KMRYVAAYLLAVLGGKTTPAAADVEKILSSVGIEADGEKLKKVITELNGKDVEQLIAAGR 229
+ R AA +AV G+TT AAA + SS G + ++ + L +D +A R
Sbjct: 3 RKREAAAAAVAVADGETTTAAARADSSSSSEGGSVCDDVVRNIFARLPARDAVASMALSR 62
>12_02_1217 + 27082452-27083593,27085041-27085158
Length = 419
Score = 29.5 bits (63), Expect = 1.5
Identities = 14/33 (42%), Positives = 20/33 (60%)
Frame = +2
Query: 71 YLLAVLGGKTTPAAADVEKILSSVGIEADGEKL 169
Y+LA+ TPA +D E+ VG +ADG+ L
Sbjct: 27 YVLALSSSCNTPACSDEEEEDDEVGSDADGDDL 59
>11_01_0139 - 1159748-1160173,1160229-1160301,1161600-1161877
Length = 258
Score = 29.1 bits (62), Expect = 2.0
Identities = 15/42 (35%), Positives = 25/42 (59%)
Frame = +2
Query: 95 KTTPAAADVEKILSSVGIEADGEKLKKVITELNGKDVEQLIA 220
KTT E +L+ + DG+K KKV+ L ++VE+L++
Sbjct: 137 KTTTEDDHEEVLLAYRSRKEDGKKRKKVVRRLGKEEVERLLS 178
Score = 27.5 bits (58), Expect = 6.0
Identities = 10/22 (45%), Positives = 18/22 (81%)
Frame = +2
Query: 155 DGEKLKKVITELNGKDVEQLIA 220
DG+K+KKV+ L ++VE+L++
Sbjct: 36 DGKKMKKVVKRLGKEEVERLLS 57
>12_01_0140 - 1088400-1088843
Length = 147
Score = 28.7 bits (61), Expect = 2.6
Identities = 16/44 (36%), Positives = 27/44 (61%), Gaps = 2/44 (4%)
Frame = +2
Query: 95 KTTPAAADVEKILSSVGI--EADGEKLKKVITELNGKDVEQLIA 220
KTT D E++L + + DG+K KKV+ L ++VE+L++
Sbjct: 25 KTTTTEDDHEEVLLAYRPREKEDGKKRKKVVRRLGKEEVERLLS 68
>05_01_0120 - 828834-831143
Length = 769
Score = 28.3 bits (60), Expect = 3.4
Identities = 18/62 (29%), Positives = 27/62 (43%)
Frame = -1
Query: 261 SASTGIDDSFSRPAAISCSTSLPLSSVITFLSFSPSASIPTELRIFSTSAAAGVVLPPST 82
+A F P+++S +S+ S SPS S PT L + S+ L PS+
Sbjct: 494 AAEASTSPPFLSPSSLSSDSSISSKYSSDSPSLSPSTSSPTSLGLSPASSNFSHTLVPSS 553
Query: 81 AS 76
S
Sbjct: 554 RS 555
>10_08_0104 +
14824122-14824178,14824274-14824318,14824419-14824536,
14825522-14825581,14825783-14825891,14825972-14826197,
14826274-14826390,14826510-14826611
Length = 277
Score = 27.9 bits (59), Expect = 4.5
Identities = 13/31 (41%), Positives = 19/31 (61%)
Frame = +2
Query: 80 AVLGGKTTPAAADVEKILSSVGIEADGEKLK 172
A+L GK TP D+E+ L + G GE++K
Sbjct: 14 ALLRGKETPVILDLEESLRAKGDMTQGEEVK 44
>09_02_0080 - 4020020-4020047,4020160-4022044,4022079-4022817
Length = 883
Score = 27.9 bits (59), Expect = 4.5
Identities = 14/33 (42%), Positives = 18/33 (54%)
Frame = -1
Query: 162 SPSASIPTELRIFSTSAAAGVVLPPSTASKYAA 64
+P+ IPT F T A V +PP+TA AA
Sbjct: 533 APAPPIPTPSMPFPTVPAPPVTVPPATAPSMAA 565
>03_03_0256 + 15898702-15900420
Length = 572
Score = 27.9 bits (59), Expect = 4.5
Identities = 13/37 (35%), Positives = 22/37 (59%)
Frame = -1
Query: 261 SASTGIDDSFSRPAAISCSTSLPLSSVITFLSFSPSA 151
SA+ +DD+ +A + STS PL + + F+P+A
Sbjct: 35 SAAPAVDDTALALSAAAASTSRPLDPSLHLVPFNPTA 71
>01_07_0053 +
40772966-40773080,40773484-40773578,40773730-40773843,
40773984-40774088,40774179-40774250,40774293-40774346,
40774507-40774619,40774705-40774839,40774941-40775009,
40775140-40775227,40775327-40775398,40775476-40775576,
40775836-40775953,40776054-40776113,40776206-40776316,
40776499-40776573,40776821-40776854,40777453-40777805,
40778154-40778222,40778526-40778762
Length = 729
Score = 27.9 bits (59), Expect = 4.5
Identities = 16/69 (23%), Positives = 31/69 (44%)
Frame = -1
Query: 267 RCSASTGIDDSFSRPAAISCSTSLPLSSVITFLSFSPSASIPTELRIFSTSAAAGVVLPP 88
+CS+S + + ++ SS+++ +S SPSA+ LR + A G
Sbjct: 514 KCSSSYQLSKKRAAELSVWSEMMSSSSSLVSAISASPSATAKARLRHDDAATATGAAAAA 573
Query: 87 STASKYAAT 61
+ A++ T
Sbjct: 574 AVAARQLKT 582
>12_01_0141 - 1091579-1091983
Length = 134
Score = 27.5 bits (58), Expect = 6.0
Identities = 11/24 (45%), Positives = 18/24 (75%)
Frame = +2
Query: 149 EADGEKLKKVITELNGKDVEQLIA 220
E DG+K KKV+ L ++VE+L++
Sbjct: 30 EEDGKKRKKVVRRLGKEEVERLLS 53
>03_02_0539 - 9329572-9330729,9330988-9331041
Length = 403
Score = 27.5 bits (58), Expect = 6.0
Identities = 21/66 (31%), Positives = 31/66 (46%), Gaps = 1/66 (1%)
Frame = -1
Query: 270 CRCSASTGIDDSFSRPAAISCSTSLPLSSVITFLSFSPSASIPTELRIFSTS-AAAGVVL 94
CR + +G S + A S S+S P SS L ++ +P+ AAAG ++
Sbjct: 140 CRRNKRSGKSSS-AAAAGASSSSSKPSSSAARQLPGGGASPMPSAAASTQPGGAAAGAII 198
Query: 93 PPSTAS 76
PPS S
Sbjct: 199 PPSGLS 204
>01_01_1092 - 8593414-8593776,8597750-8597931,8598080-8598152
Length = 205
Score = 27.5 bits (58), Expect = 6.0
Identities = 16/34 (47%), Positives = 22/34 (64%), Gaps = 2/34 (5%)
Frame = -1
Query: 171 LSFSPSASIPTELRI--FSTSAAAGVVLPPSTAS 76
LS+SPSAS T+L I + + A V PPS++S
Sbjct: 114 LSYSPSASSITDLPIAPYPLNYAVAPVAPPSSSS 147
>08_01_0152 -
1190358-1190462,1190648-1190765,1191134-1192691,
1193338-1193530
Length = 657
Score = 27.1 bits (57), Expect = 7.9
Identities = 15/44 (34%), Positives = 20/44 (45%)
Frame = +1
Query: 7 LFFRHYTFRVN*DLKNALRGRVFTGCAGWQDHASCR*R*EDPQL 138
+ HY ++V K+ GRV T A WQD + R P L
Sbjct: 501 MLINHYKYQVWEVFKDKFSGRVATYVADWQDEENVGSRDRAPGL 544
>04_04_1284 +
32376870-32376874,32376876-32376935,32377166-32377301,
32377439-32377596,32377791-32377881,32377975-32378094,
32378166-32378234,32378354-32378445,32378578-32378680,
32378761-32378868,32378949-32379011,32379073-32379144,
32379322-32379399,32379478-32379540,32379617-32379680,
32379817-32379902,32380456-32380569,32380760-32380837,
32381068-32381303,32381486-32381576,32381706-32381894,
32382082-32382117
Length = 703
Score = 27.1 bits (57), Expect = 7.9
Identities = 15/41 (36%), Positives = 23/41 (56%)
Frame = +2
Query: 134 SSVGIEADGEKLKKVITELNGKDVEQLIAAGREKLSSMPVE 256
+ VG D EKL+ ELN + +E L+A K+ +PV+
Sbjct: 426 TGVGNIDDSEKLRP--EELNQQTIEALVAENNLKMEILPVD 464
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,907,304
Number of Sequences: 37544
Number of extensions: 152768
Number of successful extensions: 535
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 524
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 535
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 987904180
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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