Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30677
         (483 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g27710.3 68415.m03359 60S acidic ribosomal protein P2 (RPP2B)       80   9e-16
At2g27710.2 68415.m03358 60S acidic ribosomal protein P2 (RPP2B)       80   9e-16
At2g27710.1 68415.m03357 60S acidic ribosomal protein P2 (RPP2B)       80   9e-16
At3g44590.2 68416.m04793 60S acidic ribosomal protein P2 (RPP2D)...    77   8e-15
At3g44590.1 68416.m04792 60S acidic ribosomal protein P2 (RPP2D)...    77   8e-15
At2g27720.1 68415.m03360 60S acidic ribosomal protein P2 (RPP2A)       76   1e-14
At5g40040.1 68418.m04856 60S acidic ribosomal protein P2 (RPP2E)...    66   1e-11
At3g28500.1 68416.m03560 60S acidic ribosomal protein P2 (RPP2C)...    65   2e-11
At3g63200.1 68416.m07100 patatin-related low similarity to patat...    31   0.54 
At1g67140.1 68414.m07638 expressed protein                             29   2.2  
At4g29880.1 68417.m04252 leucine-rich repeat family protein cont...    27   6.6  
At4g31210.1 68417.m04432 DNA topoisomerase family protein simila...    27   8.8  

>At2g27710.3 68415.m03359 60S acidic ribosomal protein P2 (RPP2B)
          Length = 115

 Score = 79.8 bits (188), Expect = 9e-16
 Identities = 36/66 (54%), Positives = 52/66 (78%)
 Frame = +2

Query: 53  MRYVAAYLLAVLGGKTTPAAADVEKILSSVGIEADGEKLKKVITELNGKDVEQLIAAGRE 232
           M+ VAAYLLAVL GK +P +AD++ IL SVG E +  +++ ++ E+ GKD+ +LIAAGRE
Sbjct: 1   MKVVAAYLLAVLSGKASPTSADIKTILGSVGAETEDSQIELLLKEVKGKDLAELIAAGRE 60

Query: 233 KLSSMP 250
           KL+S+P
Sbjct: 61  KLASVP 66


>At2g27710.2 68415.m03358 60S acidic ribosomal protein P2 (RPP2B)
          Length = 115

 Score = 79.8 bits (188), Expect = 9e-16
 Identities = 36/66 (54%), Positives = 52/66 (78%)
 Frame = +2

Query: 53  MRYVAAYLLAVLGGKTTPAAADVEKILSSVGIEADGEKLKKVITELNGKDVEQLIAAGRE 232
           M+ VAAYLLAVL GK +P +AD++ IL SVG E +  +++ ++ E+ GKD+ +LIAAGRE
Sbjct: 1   MKVVAAYLLAVLSGKASPTSADIKTILGSVGAETEDSQIELLLKEVKGKDLAELIAAGRE 60

Query: 233 KLSSMP 250
           KL+S+P
Sbjct: 61  KLASVP 66


>At2g27710.1 68415.m03357 60S acidic ribosomal protein P2 (RPP2B)
          Length = 115

 Score = 79.8 bits (188), Expect = 9e-16
 Identities = 36/66 (54%), Positives = 52/66 (78%)
 Frame = +2

Query: 53  MRYVAAYLLAVLGGKTTPAAADVEKILSSVGIEADGEKLKKVITELNGKDVEQLIAAGRE 232
           M+ VAAYLLAVL GK +P +AD++ IL SVG E +  +++ ++ E+ GKD+ +LIAAGRE
Sbjct: 1   MKVVAAYLLAVLSGKASPTSADIKTILGSVGAETEDSQIELLLKEVKGKDLAELIAAGRE 60

Query: 233 KLSSMP 250
           KL+S+P
Sbjct: 61  KLASVP 66


>At3g44590.2 68416.m04793 60S acidic ribosomal protein P2 (RPP2D)
           acidic ribosomal protein P2, maize,  PIR:S54179
          Length = 111

 Score = 76.6 bits (180), Expect = 8e-15
 Identities = 32/66 (48%), Positives = 52/66 (78%)
 Frame = +2

Query: 53  MRYVAAYLLAVLGGKTTPAAADVEKILSSVGIEADGEKLKKVITELNGKDVEQLIAAGRE 232
           M+  AA+LLAVLGG   P+A +++ I+ +VG + DGE ++ ++ E++GKD+ +LIA+GRE
Sbjct: 1   MKVAAAFLLAVLGGNANPSADNIKDIIGAVGADVDGESIELLLKEVSGKDIAELIASGRE 60

Query: 233 KLSSMP 250
           KL+S+P
Sbjct: 61  KLASVP 66


>At3g44590.1 68416.m04792 60S acidic ribosomal protein P2 (RPP2D)
           acidic ribosomal protein P2, maize,  PIR:S54179
          Length = 111

 Score = 76.6 bits (180), Expect = 8e-15
 Identities = 32/66 (48%), Positives = 52/66 (78%)
 Frame = +2

Query: 53  MRYVAAYLLAVLGGKTTPAAADVEKILSSVGIEADGEKLKKVITELNGKDVEQLIAAGRE 232
           M+  AA+LLAVLGG   P+A +++ I+ +VG + DGE ++ ++ E++GKD+ +LIA+GRE
Sbjct: 1   MKVAAAFLLAVLGGNANPSADNIKDIIGAVGADVDGESIELLLKEVSGKDIAELIASGRE 60

Query: 233 KLSSMP 250
           KL+S+P
Sbjct: 61  KLASVP 66


>At2g27720.1 68415.m03360 60S acidic ribosomal protein P2 (RPP2A)
          Length = 115

 Score = 76.2 bits (179), Expect = 1e-14
 Identities = 34/66 (51%), Positives = 50/66 (75%)
 Frame = +2

Query: 53  MRYVAAYLLAVLGGKTTPAAADVEKILSSVGIEADGEKLKKVITELNGKDVEQLIAAGRE 232
           M+ VAA+LLAVL GK +P   D++ IL SVG E +  +++ ++ E+ GKD+ +LIAAGRE
Sbjct: 1   MKVVAAFLLAVLSGKASPTTGDIKDILGSVGAETEDSQIELLLKEVKGKDLAELIAAGRE 60

Query: 233 KLSSMP 250
           KL+S+P
Sbjct: 61  KLASVP 66


>At5g40040.1 68418.m04856 60S acidic ribosomal protein P2 (RPP2E)
           acidic ribosomal protein P2, Parthenium
           argentatum,SWISSPROT:RLA2_PARAR
          Length = 114

 Score = 66.1 bits (154), Expect = 1e-11
 Identities = 31/65 (47%), Positives = 45/65 (69%)
 Frame = +2

Query: 53  MRYVAAYLLAVLGGKTTPAAADVEKILSSVGIEADGEKLKKVITELNGKDVEQLIAAGRE 232
           M+ VAAYLLA L G   P+ AD++KI+ SVG E D EK+    + +  +DV +LIA GRE
Sbjct: 1   MKVVAAYLLAKLSGNENPSVADLKKIVESVGAEIDQEKIDLFFSLIKDRDVTELIAVGRE 60

Query: 233 KLSSM 247
           K++++
Sbjct: 61  KMAAL 65


>At3g28500.1 68416.m03560 60S acidic ribosomal protein P2 (RPP2C)
           similar to acidic ribosomal protein P2b (rpp2b)
           GB:U62753 GI:2431770 from [Zea mays]
          Length = 115

 Score = 65.3 bits (152), Expect = 2e-11
 Identities = 31/65 (47%), Positives = 45/65 (69%)
 Frame = +2

Query: 53  MRYVAAYLLAVLGGKTTPAAADVEKILSSVGIEADGEKLKKVITELNGKDVEQLIAAGRE 232
           M+ +AA+LLA LGG   P + D++KIL SVG E D  K+  + + +   DV +LIAAGRE
Sbjct: 1   MKVIAAFLLAKLGGNENPTSNDLKKILESVGAEIDETKIDLLFSLIKDHDVTELIAAGRE 60

Query: 233 KLSSM 247
           K+S++
Sbjct: 61  KMSAL 65


>At3g63200.1 68416.m07100 patatin-related low similarity to
           patatin-like latex protein allergen Hev b 7 - Hevea
           brasiliensis, EMBL:AF113546; contains patatin domain
           PF01734
          Length = 384

 Score = 30.7 bits (66), Expect = 0.54
 Identities = 15/47 (31%), Positives = 28/47 (59%), Gaps = 4/47 (8%)
 Frame = +2

Query: 122 EKILSSVGIEADGEKLKKVITELNGKDVE----QLIAAGREKLSSMP 250
           E++L   G+E     +K+++TE NG+ +E    +L+A+G+  L   P
Sbjct: 325 EELLKERGVETAPFGVKRILTESNGERIEGFVQRLVASGKSSLPPSP 371


>At1g67140.1 68414.m07638 expressed protein
          Length = 2158

 Score = 28.7 bits (61), Expect = 2.2
 Identities = 15/42 (35%), Positives = 25/42 (59%)
 Frame = -3

Query: 238  QLLTSGRNKLFNILAVELSDYFLKLLTVSFDTDGAEDLLNVS 113
            Q L++GR      L+++L    L++L+ SF  D + D+L VS
Sbjct: 1403 QSLSAGRFFSSGFLSIDLCQELLQVLSYSFHMDSSWDILAVS 1444


>At4g29880.1 68417.m04252 leucine-rich repeat family protein
           contains leucine rich repeats, Pfam:PF00560
          Length = 404

 Score = 27.1 bits (57), Expect = 6.6
 Identities = 19/70 (27%), Positives = 33/70 (47%)
 Frame = -3

Query: 247 H*RQLLTSGRNKLFNILAVELSDYFLKLLTVSFDTDGAEDLLNVSGSWRGLATQHSQ*IR 68
           H +++  S   +L N++A+++    +K L  S        +LNVSG++     Q  Q  R
Sbjct: 87  HIKKIPESLTARLLNLIALDIHSNQIKALPNSIGCLSKLKILNVSGNFLVSLPQTIQNCR 146

Query: 67  GHVTHFLSPN 38
            H +    PN
Sbjct: 147 FHTSTKSGPN 156


>At4g31210.1 68417.m04432 DNA topoisomerase family protein similar to
            DNA Topoisomerase I (SP:Q9X3X7) {Zymomonas mobilis}
          Length = 1280

 Score = 26.6 bits (56), Expect = 8.8
 Identities = 14/34 (41%), Positives = 19/34 (55%), Gaps = 3/34 (8%)
 Frame = -3

Query: 187  LSDYFLKLLTVSFDTDGAEDLLNVSG---SWRGL 95
            L+ YF ++   SF  D   +L NVSG    W+GL
Sbjct: 1006 LTHYFTEITDYSFTADMETELDNVSGGVTEWKGL 1039


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,685,151
Number of Sequences: 28952
Number of extensions: 114629
Number of successful extensions: 357
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 353
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 357
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 829097472
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)