Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30676
(672 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31 |Schizo... 29 0.46
SPAC688.11 |end4|sla2|Huntingtin-interacting protein homolog|Sch... 29 0.81
SPCC18B5.03 |wee1||dual specificity protein kinase Wee1|Schizosa... 27 1.9
SPAC17A2.14 ||SPAC17G6.01|CorA family magnesium ion transporter|... 27 3.3
SPAC30D11.04c |nup124||nucleoporin Nup124|Schizosaccharomyces po... 27 3.3
SPAC1805.14 |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 26 5.7
SPAC23H3.05c |swd1||COMPASS complex subunit Swd1|Schizosaccharom... 26 5.7
SPAC3C7.03c |rhp55||RecA family ATPase Rhp55|Schizosaccharomyces... 25 7.5
SPBP35G2.11c |||transcription related zf-ZZ type zinc finger pro... 25 7.5
SPCC11E10.06c |||RNA polymerase II elongator complex subunit Elp... 25 9.9
SPAC18G6.05c |||translation elongation regulator Gcn1 |Schizosac... 25 9.9
SPBC30D10.11 |gpi1||pig-Q|Schizosaccharomyces pombe|chr 2|||Manual 25 9.9
SPAC1805.17 |crm1|caf2, SPAC1B2.01|nuclear export receptor Crm1|... 25 9.9
>SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1224
Score = 29.5 bits (63), Expect = 0.46
Identities = 11/39 (28%), Positives = 17/39 (43%)
Frame = +2
Query: 503 PSHPTPFNPIRKTKPINKTFKPGPEFNQFPIEPLTDLII 619
PSHP P+ P+ P+ + N P P T + +
Sbjct: 951 PSHPNPYTPVAPQSPVAAASRISSSPNMPPSNPYTPIAV 989
>SPAC688.11 |end4|sla2|Huntingtin-interacting protein
homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1092
Score = 28.7 bits (61), Expect = 0.81
Identities = 15/42 (35%), Positives = 20/42 (47%), Gaps = 1/42 (2%)
Frame = +2
Query: 290 KPVTEEPEDEYEINTP-TAFSSSGYSTPEPQNDFYDITTTSQ 412
+P P E+N P T+ + YS PEP DF+ T Q
Sbjct: 290 QPTGTSPSPPVEMNFPDTSDITPAYSEPEPIQDFWSDPTLDQ 331
>SPCC18B5.03 |wee1||dual specificity protein kinase
Wee1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 877
Score = 27.5 bits (58), Expect = 1.9
Identities = 14/33 (42%), Positives = 18/33 (54%)
Frame = +3
Query: 345 FRPAATLHPNLKMTSTTSPPLLSQNHP*SLTRS 443
F P AT PN TST +PP + +P +L S
Sbjct: 222 FSPFATSSPNFLSTSTPAPPNSNNANPSTLFSS 254
>SPAC17A2.14 ||SPAC17G6.01|CorA family magnesium ion
transporter|Schizosaccharomyces pombe|chr 1|||Manual
Length = 617
Score = 26.6 bits (56), Expect = 3.3
Identities = 12/38 (31%), Positives = 20/38 (52%)
Frame = +2
Query: 281 EPAKPVTEEPEDEYEINTPTAFSSSGYSTPEPQNDFYD 394
EP + ED+ +IN P + SS S+P+ + Y+
Sbjct: 67 EPPSEHSSNGEDDKDINNPPSMPSSVCSSPKSPHRHYE 104
>SPAC30D11.04c |nup124||nucleoporin Nup124|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1159
Score = 26.6 bits (56), Expect = 3.3
Identities = 11/45 (24%), Positives = 24/45 (53%), Gaps = 2/45 (4%)
Frame = +2
Query: 281 EPAKPVTEEPEDEYEIN--TPTAFSSSGYSTPEPQNDFYDITTTS 409
EP+ P + P + TP+AF++S +P P +++ +++
Sbjct: 1095 EPSNPASNPPSTGFSFGAATPSAFNASASQSPAPNGIQFNLGSSN 1139
>SPAC1805.14 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 452
Score = 25.8 bits (54), Expect = 5.7
Identities = 14/41 (34%), Positives = 24/41 (58%), Gaps = 3/41 (7%)
Frame = +2
Query: 305 EPEDE---YEINTPTAFSSSGYSTPEPQNDFYDITTTSQPK 418
EP+D +++N S+ GYST EP+++F T+ P+
Sbjct: 206 EPKDSQFNHDVNLMQG-SAPGYSTVEPEDNFASEIQTNAPE 245
>SPAC23H3.05c |swd1||COMPASS complex subunit
Swd1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 398
Score = 25.8 bits (54), Expect = 5.7
Identities = 13/30 (43%), Positives = 19/30 (63%)
Frame = +2
Query: 260 PNLQSLDEPAKPVTEEPEDEYEINTPTAFS 349
P+ Q L+E + EEPEDE++I+ T S
Sbjct: 339 PDFQELEENIE--YEEPEDEFDIHDETGKS 366
>SPAC3C7.03c |rhp55||RecA family ATPase Rhp55|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 350
Score = 25.4 bits (53), Expect = 7.5
Identities = 14/45 (31%), Positives = 25/45 (55%)
Frame = +3
Query: 441 SHNLLLAPVQARSHPSHAIQTRLTQHLSTLSGKRNQLTKPSNLAQ 575
SH LL A+ P+H+ ++ L L T +G ++ + P+N +Q
Sbjct: 296 SHQLLRYAFMAKQPPAHSAESELAFQL-TSTGIQDYQSIPTNSSQ 339
>SPBP35G2.11c |||transcription related zf-ZZ type zinc finger
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 397
Score = 25.4 bits (53), Expect = 7.5
Identities = 17/77 (22%), Positives = 37/77 (48%)
Frame = +3
Query: 339 QLFRPAATLHPNLKMTSTTSPPLLSQNHP*SLTRSHNLLLAPVQARSHPSHAIQTRLTQH 518
+LF A+T+H +++ + + P++ + ++L + V H H++ RLT+
Sbjct: 198 ELFESASTVHRSVQCDNCLAHPIVGPRFHCLVCEDYDLCSSCVSHVHHDHHSM-LRLTRE 256
Query: 519 LSTLSGKRNQLTKPSNL 569
+S ++ KP L
Sbjct: 257 ISASPLHLSKPEKPKVL 273
>SPCC11E10.06c |||RNA polymerase II elongator complex subunit Elp4
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 361
Score = 25.0 bits (52), Expect = 9.9
Identities = 12/40 (30%), Positives = 22/40 (55%)
Frame = +3
Query: 186 PGSIPRVRRPGFARPSFKSVDASLVQIFSHLMNLRNLLLK 305
PG++ R+ P P+F S+ A+ Q F ++ + L+K
Sbjct: 198 PGTVCRLVLPSILSPAFYSIRATHPQHFIRFIHTLSSLIK 237
>SPAC18G6.05c |||translation elongation regulator Gcn1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2670
Score = 25.0 bits (52), Expect = 9.9
Identities = 10/14 (71%), Positives = 10/14 (71%)
Frame = +1
Query: 91 LLFHRDYKYQEPFL 132
LLFH KY EPFL
Sbjct: 896 LLFHNVLKYSEPFL 909
>SPBC30D10.11 |gpi1||pig-Q|Schizosaccharomyces pombe|chr 2|||Manual
Length = 653
Score = 25.0 bits (52), Expect = 9.9
Identities = 13/33 (39%), Positives = 20/33 (60%)
Frame = +3
Query: 252 SLVQIFSHLMNLRNLLLKNQKMNTKLTLLQLFR 350
S++ I HL+ L + L N ++ +LLQLFR
Sbjct: 432 SVMTIHIHLLYLASSRLYNWQLRVIYSLLQLFR 464
>SPAC1805.17 |crm1|caf2, SPAC1B2.01|nuclear export receptor
Crm1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1078
Score = 25.0 bits (52), Expect = 9.9
Identities = 20/77 (25%), Positives = 38/77 (49%), Gaps = 1/77 (1%)
Frame = +3
Query: 255 LVQIFSHLMNLRNLLLKNQKMNTKLTLLQLFRPAATLHPNLKMTSTTSP-PLLSQNHP*S 431
L+ S+L+N+ + N++ K+ L + A L+ ++ + PLL+ + P S
Sbjct: 335 LLNAHSYLLNISRI---NEREIFKICLEYWSKLVAQLYEEMQQIPMSEMNPLLNLSSPTS 391
Query: 432 LTRSHNLLLAPVQARSH 482
L S+ +LA + R H
Sbjct: 392 LISSNPNMLANLPLRKH 408
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,836,922
Number of Sequences: 5004
Number of extensions: 61967
Number of successful extensions: 213
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 204
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 213
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 307866294
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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