Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30676
(672 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_01_0030 + 262452-263210,263332-263575,263867-264165 39 0.004
12_01_0906 + 8799284-8799441,8800865-8801690,8801933-8802055,880... 30 1.5
12_02_0610 - 21019124-21019666 30 1.9
10_08_0489 + 18269824-18270270,18271659-18271948,18272341-182725... 30 1.9
02_01_0178 - 1223725-1223736,1223900-1224025,1224404-1224649,122... 29 2.6
09_06_0282 - 22017474-22017484,22017681-22018473,22018918-22019094 29 3.4
07_01_0423 - 3222466-3222797,3222913-3222982,3223060-3223149,322... 29 4.5
01_06_0027 - 25742122-25742310,25742481-25742553,25743219-25744159 29 4.5
11_04_0001 + 11984639-11984875,11984989-11985278,11985361-119857... 28 5.9
10_01_0180 - 2037656-2037858,2038517-2038579,2038909-2039782 28 5.9
07_03_0948 - 22821069-22822067 28 5.9
02_02_0587 + 11875678-11877234,11877606-11877608,11877755-118778... 28 5.9
12_01_1022 - 10435409-10435564,10435950-10436219,10436820-104371... 28 7.8
11_03_0184 + 11317787-11318198,11318337-11318671,11318756-113190... 28 7.8
>12_01_0030 + 262452-263210,263332-263575,263867-264165
Length = 433
Score = 38.7 bits (86), Expect = 0.004
Identities = 25/81 (30%), Positives = 40/81 (49%), Gaps = 2/81 (2%)
Frame = +3
Query: 351 PAATLHPNLKMTSTTSP--PLLSQNHP*SLTRSHNLLLAPVQARSHPSHAIQTRLTQHLS 524
P T +PN++ ST L Q H ++T+ N A +A HP H T L L
Sbjct: 97 PPVTHYPNMRPWSTQCDLTDKLQQQHTVTMTKKKNPYAAAAEASKHPQH---TALGSFLL 153
Query: 525 TLSGKRNQLTKPSNLAQNLTN 587
+LSG +L + +L +++T+
Sbjct: 154 SLSGDGEKLDRLRHLLRSITD 174
>12_01_0906 + 8799284-8799441,8800865-8801690,8801933-8802055,
8802144-8802210,8802611-8802714,8802798-8802900,
8803103-8803401,8804009-8804263,8805471-8805776,
8805866-8806194,8806829-8806916,8807027-8807164,
8807438-8807458
Length = 938
Score = 30.3 bits (65), Expect = 1.5
Identities = 14/53 (26%), Positives = 28/53 (52%)
Frame = +3
Query: 258 VQIFSHLMNLRNLLLKNQKMNTKLTLLQLFRPAATLHPNLKMTSTTSPPLLSQ 416
+Q++ ++N+ + ++ N +Q + P +T P+ TSTTSP L +
Sbjct: 869 MQVYGDIVNITRIFCSIKRCN-----IQKYPPTSTTRPSFPPTSTTSPSFLGR 916
>12_02_0610 - 21019124-21019666
Length = 180
Score = 29.9 bits (64), Expect = 1.9
Identities = 16/43 (37%), Positives = 24/43 (55%)
Frame = +3
Query: 435 TRSHNLLLAPVQARSHPSHAIQTRLTQHLSTLSGKRNQLTKPS 563
+R+ LAP Q R+ H + TQHL ++ G+R L+ PS
Sbjct: 74 SRAFTQALAPCQPRNQSRH----KATQHLRSVQGERRGLSLPS 112
>10_08_0489 +
18269824-18270270,18271659-18271948,18272341-18272512,
18272608-18272730,18272832-18272960,18273061-18273255,
18273384-18273470,18273563-18273835,18274047-18274154,
18274769-18275116
Length = 723
Score = 29.9 bits (64), Expect = 1.9
Identities = 22/85 (25%), Positives = 39/85 (45%), Gaps = 8/85 (9%)
Frame = -3
Query: 481 WDLA*TGARRRLWERVKDYGWFWLRSGGDVV------EVILRFGCRVAA--GRKSCRSVN 326
W A T +R +D+G++WLR +V + L G R ++ R +C S
Sbjct: 402 WMQAFTLTKRSFINMSRDFGYYWLRLIIYIVVTVCIGTIYLNVGTRYSSILARGACASFV 461
Query: 325 FVFIFWFFSNRFRRFIK*LKIWTSE 251
F F+ + F F++ +K++ E
Sbjct: 462 FGFVTFMSIGGFPSFVEDMKVFQRE 486
>02_01_0178 -
1223725-1223736,1223900-1224025,1224404-1224649,
1224731-1224922,1225059-1225138,1225233-1226826
Length = 749
Score = 29.5 bits (63), Expect = 2.6
Identities = 24/77 (31%), Positives = 32/77 (41%), Gaps = 1/77 (1%)
Frame = +3
Query: 276 LMNLRNLLLKNQKMNTKLTLLQLFRPAATLHPNL-KMTSTTSPPLLSQNHP*SLTRSHNL 452
L L L L + + + L P LHP L TSP LL + P SL S L
Sbjct: 54 LAALETLHLHRRSLRLSSAHVALLLPLLPLHPRLVSPLLATSPHLLPPSLPASLPVSPRL 113
Query: 453 LLAPVQARSHPSHAIQT 503
LL A S + ++ +
Sbjct: 114 LLLGALASSRSAKSLSS 130
>09_06_0282 - 22017474-22017484,22017681-22018473,22018918-22019094
Length = 326
Score = 29.1 bits (62), Expect = 3.4
Identities = 12/31 (38%), Positives = 15/31 (48%)
Frame = +2
Query: 302 EEPEDEYEINTPTAFSSSGYSTPEPQNDFYD 394
EE ED+ + P + GY P P DF D
Sbjct: 18 EEEEDDERVEVPKSGGVYGYDVPFPNMDFLD 48
>07_01_0423 -
3222466-3222797,3222913-3222982,3223060-3223149,
3223302-3223369,3223461-3223513,3223632-3223893,
3224181-3224223
Length = 305
Score = 28.7 bits (61), Expect = 4.5
Identities = 15/33 (45%), Positives = 20/33 (60%)
Frame = +3
Query: 204 VRRPGFARPSFKSVDASLVQIFSHLMNLRNLLL 302
V+ PGFA +K VDA L I+ LRNL++
Sbjct: 232 VQEPGFACTMYKMVDADLGNIYDS-KELRNLVI 263
>01_06_0027 - 25742122-25742310,25742481-25742553,25743219-25744159
Length = 400
Score = 28.7 bits (61), Expect = 4.5
Identities = 15/44 (34%), Positives = 20/44 (45%)
Frame = +2
Query: 242 RGCLTRPNLQSLDEPAKPVTEEPEDEYEINTPTAFSSSGYSTPE 373
+G L + P P+T P TPTA S SG +TP+
Sbjct: 158 QGSLAMSSPSPSPTPPSPLTPAPATTAPAPTPTAKSKSGQNTPK 201
>11_04_0001 +
11984639-11984875,11984989-11985278,11985361-11985719,
11985797-11985984,11986058-11986247,11986497-11986631,
11986694-11986947
Length = 550
Score = 28.3 bits (60), Expect = 5.9
Identities = 14/37 (37%), Positives = 18/37 (48%)
Frame = +3
Query: 465 VQARSHPSHAIQTRLTQHLSTLSGKRNQLTKPSNLAQ 575
+ R+ A +L HL TL RNQL K LA+
Sbjct: 360 IHLRNEAKTATIEKLVPHLGTLEATRNQLHKAKELAR 396
>10_01_0180 - 2037656-2037858,2038517-2038579,2038909-2039782
Length = 379
Score = 28.3 bits (60), Expect = 5.9
Identities = 17/45 (37%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
Frame = -2
Query: 230 RSGKSWSSYSRN*TRHRCYPSLPEAALPDWSSDRNG-SWYL*SRW 99
+SG S S + T H C P+ P + P S RNG S +L + W
Sbjct: 301 QSGIEMSVISDHETIHECPPTCPHGSKPFLKSLRNGTSLHLVANW 345
>07_03_0948 - 22821069-22822067
Length = 332
Score = 28.3 bits (60), Expect = 5.9
Identities = 15/45 (33%), Positives = 24/45 (53%)
Frame = +3
Query: 183 VPGSIPRVRRPGFARPSFKSVDASLVQIFSHLMNLRNLLLKNQKM 317
+P S+ R+R S S+ + FS L NLR+L L++ K+
Sbjct: 136 IPDSLARIRSLDSVDLSHNSLTGPIPNSFSDLPNLRSLDLRSNKL 180
>02_02_0587 +
11875678-11877234,11877606-11877608,11877755-11877823,
11878605-11878719,11879139-11879248
Length = 617
Score = 28.3 bits (60), Expect = 5.9
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = -3
Query: 211 LLTLGIEPGTGAILPCLKPPCLTGPP 134
+L+ GI P TG I ++P C GPP
Sbjct: 380 MLSRGILPSTGMITLFIEPLCTFGPP 405
>12_01_1022 -
10435409-10435564,10435950-10436219,10436820-10437125,
10437932-10438057,10439825-10439893,10440443-10440487,
10440717-10440776,10441527-10441589,10442186-10442266,
10442494-10442916
Length = 532
Score = 27.9 bits (59), Expect = 7.8
Identities = 10/29 (34%), Positives = 15/29 (51%)
Frame = +2
Query: 545 PINKTFKPGPEFNQFPIEPLTDLIIQGPE 631
P+N + PG F FP P+ + + PE
Sbjct: 393 PLNPYYPPGVPFQHFPAAPINHPMYKAPE 421
>11_03_0184 +
11317787-11318198,11318337-11318671,11318756-11319048,
11319125-11319483,11319549-11319748,11319823-11320012,
11320084-11320188,11320262-11320338,11320428-11320649
Length = 730
Score = 27.9 bits (59), Expect = 7.8
Identities = 14/37 (37%), Positives = 18/37 (48%)
Frame = +3
Query: 465 VQARSHPSHAIQTRLTQHLSTLSGKRNQLTKPSNLAQ 575
+ R+ A RL HL TL RNQL + LA+
Sbjct: 535 IHLRNEAKTATLERLVPHLGTLEATRNQLHEVKELAR 571
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,384,769
Number of Sequences: 37544
Number of extensions: 459294
Number of successful extensions: 1367
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1310
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1366
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1703141568
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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