Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30676
(672 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_32406| Best HMM Match : VWA (HMM E-Value=8.8e-32) 33 0.21
SB_9496| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.84
SB_40460| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.84
SB_28064| Best HMM Match : DUF1174 (HMM E-Value=4.5) 30 1.5
SB_28149| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.4
SB_49210| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.4
SB_22052| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.4
SB_8349| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.4
SB_55826| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.5
SB_45545| Best HMM Match : Vicilin_N (HMM E-Value=1.1) 29 4.5
SB_15358| Best HMM Match : Baculo_PEP_C (HMM E-Value=0.03) 28 6.0
SB_46050| Best HMM Match : RRM_1 (HMM E-Value=1.7e-33) 28 7.9
SB_40039| Best HMM Match : F5_F8_type_C (HMM E-Value=6.2e-12) 28 7.9
SB_800| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.9
SB_37321| Best HMM Match : Pkinase (HMM E-Value=2.4e-27) 28 7.9
>SB_32406| Best HMM Match : VWA (HMM E-Value=8.8e-32)
Length = 1074
Score = 33.1 bits (72), Expect = 0.21
Identities = 19/35 (54%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
Frame = +3
Query: 117 PGAIPVGGPVRQGGFRQGRIAP-VPGSIPRVRRPG 218
PG IP P R+ G R G I P VPG I RRPG
Sbjct: 517 PGGIPGRTPGRRPGGRPGNIPPFVPGLIIPSRRPG 551
>SB_9496| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2309
Score = 31.1 bits (67), Expect = 0.84
Identities = 17/48 (35%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
Frame = +2
Query: 269 QSLDEPAKPVTEEPEDEYEINTPTAFSSSGYSTPEPQND-FYDITTTS 409
Q +++ K ++EPE E + +A + S PE D FYD+ TTS
Sbjct: 2122 QIVNKTPKQTSKEPEPEVSPKSESAEALKVTSAPEVTKDTFYDVNTTS 2169
>SB_40460| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 831
Score = 31.1 bits (67), Expect = 0.84
Identities = 17/45 (37%), Positives = 21/45 (46%), Gaps = 3/45 (6%)
Frame = +3
Query: 90 SPIPPRLQIPGAIPVGGPVRQG---GFRQGRIAPVPGSIPRVRRP 215
S PPR +P P+GGPVR G + PVP + RP
Sbjct: 336 SASPPRHTLPRPEPIGGPVRGSEPKGVARADAPPVPARTDQTPRP 380
>SB_28064| Best HMM Match : DUF1174 (HMM E-Value=4.5)
Length = 404
Score = 30.3 bits (65), Expect = 1.5
Identities = 18/41 (43%), Positives = 23/41 (56%)
Frame = -1
Query: 534 LIGLKGVG*DGSVLRGTDGI*LEQGLGEDCGNGLKIMGGFG 412
L G KG+G G+ L GT G+ +G+GE G GL G G
Sbjct: 183 LAGTKGIGEHGTGLAGTKGMGGNKGIGEH-GTGLGGNKGIG 222
>SB_28149| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 209
Score = 29.1 bits (62), Expect = 3.4
Identities = 15/38 (39%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
Frame = +2
Query: 497 TDPSHPTPFNPIRKTKPINKTFKPGPEFNQF-PIEPLT 607
T SHP P+ + +P+NK + G N F PI P T
Sbjct: 168 TSTSHPLTHMPLYRPQPLNK-YSDGTSVNTFAPIPPST 204
>SB_49210| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 103
Score = 29.1 bits (62), Expect = 3.4
Identities = 22/93 (23%), Positives = 39/93 (41%), Gaps = 4/93 (4%)
Frame = +3
Query: 27 SIMRTLLISMLFALTAYAQNDSPIPPRLQIPG---AIPVGGPVRQGGFRQGRIAPVPGSI 197
+I L+I + A+T + + P P +PVG P G + +A G
Sbjct: 9 NIAMVLVILAIVAVTLFRRETHDSPEFEDFPTDSEPLPVGPPDADGPYHHAAVAADSGKC 68
Query: 198 PRVRRPGFARPSFKSVDASLVQIFS-HLMNLRN 293
+ R + +VDA++ +F LMN+ +
Sbjct: 69 SEIGRDMMKLRNGSAVDATIAALFCIGLMNIHS 101
>SB_22052| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 216
Score = 29.1 bits (62), Expect = 3.4
Identities = 19/62 (30%), Positives = 30/62 (48%), Gaps = 2/62 (3%)
Frame = -3
Query: 295 RFRRFIK*LKIWTSEASTDLKDGLANPGLLTLGIEPGT--GAILPCLKPPCLTGPPTGMA 122
R RRFI K+ S+ + ++ D L+ P L ++ + P T + PC + PP G
Sbjct: 40 RHRRFISLCKLEKSDCTPNINDVLSKPYLCSMELNPATIGQSSTPCNSNGTIP-PPIGAF 98
Query: 121 PG 116
G
Sbjct: 99 NG 100
>SB_8349| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1104
Score = 29.1 bits (62), Expect = 3.4
Identities = 19/58 (32%), Positives = 25/58 (43%), Gaps = 1/58 (1%)
Frame = +2
Query: 242 RGCLTRPNLQSLDEPAKPVTEEPEDEYEINTPTAFSSSGYSTPE-PQNDFYDITTTSQ 412
RG L + S +E +P+T+ +TP A S SG PE P Y T Q
Sbjct: 155 RGDLILKEIASDEEVERPITQRLHQPLAFSTP-ALSQSGLGNPETPDVSLYKTCETPQ 211
>SB_55826| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1199
Score = 28.7 bits (61), Expect = 4.5
Identities = 23/63 (36%), Positives = 28/63 (44%), Gaps = 2/63 (3%)
Frame = +3
Query: 75 YAQNDSPIPPRLQIPGAIPVGGPVRQGGFRQGRIAPVP--GSIPRVRRPGFARPSFKSVD 248
+A N SP R GA G P+ + R VP G IP ++RP F PSF S
Sbjct: 820 HAMNKSP--ERSPREGADRRGLPMTLSDLNRRREQGVPSEGPIPGLKRPDFLLPSFGSPP 877
Query: 249 ASL 257
L
Sbjct: 878 GGL 880
>SB_45545| Best HMM Match : Vicilin_N (HMM E-Value=1.1)
Length = 729
Score = 28.7 bits (61), Expect = 4.5
Identities = 23/63 (36%), Positives = 28/63 (44%), Gaps = 2/63 (3%)
Frame = +3
Query: 75 YAQNDSPIPPRLQIPGAIPVGGPVRQGGFRQGRIAPVP--GSIPRVRRPGFARPSFKSVD 248
+A N SP R GA G P+ + R VP G IP ++RP F PSF S
Sbjct: 16 HAMNKSP--ERSPREGADRRGLPMTLSDLNRRREQGVPSEGPIPGLKRPDFLLPSFGSPP 73
Query: 249 ASL 257
L
Sbjct: 74 GGL 76
>SB_15358| Best HMM Match : Baculo_PEP_C (HMM E-Value=0.03)
Length = 435
Score = 28.3 bits (60), Expect = 6.0
Identities = 17/35 (48%), Positives = 21/35 (60%)
Frame = -3
Query: 217 PGLLTLGIEPGTGAILPCLKPPCLTGPPTGMAPGI 113
PGL G+ PG +LPCL P L G P G+ PG+
Sbjct: 189 PGLP--GVLPGLPGVLPCL-PGVLPGLP-GVLPGL 219
>SB_46050| Best HMM Match : RRM_1 (HMM E-Value=1.7e-33)
Length = 392
Score = 27.9 bits (59), Expect = 7.9
Identities = 17/42 (40%), Positives = 21/42 (50%)
Frame = +3
Query: 111 QIPGAIPVGGPVRQGGFRQGRIAPVPGSIPRVRRPGFARPSF 236
++PGAI GG QGG QG PG P + + G P F
Sbjct: 205 EMPGAIQPGGAPLQGGPPQGESHGQPGP-PALLQQGPPGPPF 245
>SB_40039| Best HMM Match : F5_F8_type_C (HMM E-Value=6.2e-12)
Length = 1093
Score = 27.9 bits (59), Expect = 7.9
Identities = 13/38 (34%), Positives = 21/38 (55%)
Frame = +2
Query: 275 LDEPAKPVTEEPEDEYEINTPTAFSSSGYSTPEPQNDF 388
+DEP KP ++E +++Y +N P SS +N F
Sbjct: 589 IDEPVKPKSKEKKNKY-LNVPELGSSKSEKVMMEENTF 625
>SB_800| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 610
Score = 27.9 bits (59), Expect = 7.9
Identities = 15/45 (33%), Positives = 20/45 (44%), Gaps = 1/45 (2%)
Frame = +2
Query: 497 TDPSHPT-PFNPIRKTKPINKTFKPGPEFNQFPIEPLTDLIIQGP 628
+DP+ PT P +P T P + T GP P P + GP
Sbjct: 441 SDPTDPTVPSDPTDPTVPSDPTVPAGPTVPSGPAVPTGPTVPSGP 485
>SB_37321| Best HMM Match : Pkinase (HMM E-Value=2.4e-27)
Length = 592
Score = 27.9 bits (59), Expect = 7.9
Identities = 15/51 (29%), Positives = 23/51 (45%), Gaps = 2/51 (3%)
Frame = +2
Query: 251 LTRPNLQSLDEPAKPVTEEPEDEYEINTPTAFSSSGYSTP--EPQNDFYDI 397
+T +++ D+PAK PED +P EP ++FYDI
Sbjct: 97 MTALSVEPADKPAKKADNIPEDLQRCGKAAVLGKMSIVSPNSEPIDNFYDI 147
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,581,267
Number of Sequences: 59808
Number of extensions: 502158
Number of successful extensions: 1544
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1279
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1538
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1721264831
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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