Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30676
         (672 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z79756-6|CAB02117.3|  693|Caenorhabditis elegans Hypothetical pr...    31   0.99 
U13643-3|AAA21086.3|  394|Caenorhabditis elegans Brca homolog (t...    29   3.0  
AY523518-1|AAR98640.1|  394|Caenorhabditis elegans potential BRC...    29   3.0  
U10401-6|AAA19061.1|  697|Caenorhabditis elegans Hmg protein 4 p...    29   4.0  
AC024136-1|AAF35961.1|  755|Caenorhabditis elegans Hypothetical ...    29   4.0  
Z73425-2|CAA97788.1| 1126|Caenorhabditis elegans Hypothetical pr...    28   5.3  
Z35662-1|CAA84721.1| 4307|Caenorhabditis elegans Hypothetical pr...    28   5.3  
Z35599-4|CAA84661.1| 4307|Caenorhabditis elegans Hypothetical pr...    28   5.3  
Z34802-10|CAA84339.1| 4307|Caenorhabditis elegans Hypothetical p...    28   5.3  
U42841-12|AAC48169.2| 1030|Caenorhabditis elegans Gex interactin...    28   6.9  
U40799-6|AAA81484.2|  210|Caenorhabditis elegans Ground-like (gr...    28   6.9  
AC006605-4|AAK85441.2| 1378|Caenorhabditis elegans Hypothetical ...    28   6.9  
U21310-1|AAA62519.1|  997|Caenorhabditis elegans Hypothetical pr...    27   9.2  
L12018-1|AAA65458.1|  518|Caenorhabditis elegans Polk (dna polym...    27   9.2  

>Z79756-6|CAB02117.3|  693|Caenorhabditis elegans Hypothetical
           protein F53C11.2 protein.
          Length = 693

 Score = 30.7 bits (66), Expect = 0.99
 Identities = 12/25 (48%), Positives = 17/25 (68%)
 Frame = +2

Query: 11  VTCDREHHAYVTDFYAVCFNSLCTK 85
           VTCD + H +VT  +AVC  S C++
Sbjct: 137 VTCDPKTHEHVTPRFAVCMPSSCSE 161


>U13643-3|AAA21086.3|  394|Caenorhabditis elegans Brca homolog
           (tumor suppressorgene brca1) protein 2 protein.
          Length = 394

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 11/16 (68%), Positives = 12/16 (75%)
 Frame = -3

Query: 565 FEGFVNWFRFPDRVER 518
           +EGF NWFRF D  ER
Sbjct: 327 YEGFDNWFRFKDPQER 342


>AY523518-1|AAR98640.1|  394|Caenorhabditis elegans potential
           BRCA2-like protein (44.7kD) (3H990) protein.
          Length = 394

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 11/16 (68%), Positives = 12/16 (75%)
 Frame = -3

Query: 565 FEGFVNWFRFPDRVER 518
           +EGF NWFRF D  ER
Sbjct: 327 YEGFDNWFRFKDPQER 342


>U10401-6|AAA19061.1|  697|Caenorhabditis elegans Hmg protein 4
           protein.
          Length = 697

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 13/46 (28%), Positives = 22/46 (47%)
 Frame = +2

Query: 281 EPAKPVTEEPEDEYEINTPTAFSSSGYSTPEPQNDFYDITTTSQPK 418
           E ++    EP+DEY+  +    S +G S P+ + D        +PK
Sbjct: 485 ESSEGTGSEPDDEYDSGSEQDSSGTGESEPDSEQDVPSKRRKGEPK 530


>AC024136-1|AAF35961.1|  755|Caenorhabditis elegans Hypothetical
           protein F54A3.4 protein.
          Length = 755

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 18/56 (32%), Positives = 27/56 (48%)
 Frame = -3

Query: 217 PGLLTLGIEPGTGAILPCLKPPCLTGPPTGMAPGICSLGGIGESFCA*AVKANSIE 50
           P  + +G++P  G+IL        TGP TG AP    + GIG  F    +   S++
Sbjct: 538 PNAIVVGVDPN-GSIL--------TGPTTGPAPDFYEVEGIGYDFIPGTLDEKSVD 584


>Z73425-2|CAA97788.1| 1126|Caenorhabditis elegans Hypothetical
           protein F12F6.6 protein.
          Length = 1126

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 18/50 (36%), Positives = 21/50 (42%), Gaps = 6/50 (12%)
 Frame = +3

Query: 99  PPRLQIPGAIPVG------GPVRQGGFRQGRIAPVPGSIPRVRRPGFARP 230
           PP  Q+PG+ P G      GP     F  G  APV   +P    PG   P
Sbjct: 243 PPGPQVPGSYPSGPADIPQGPGMPRAFPPGASAPVAPGMPGAFPPGQGGP 292


>Z35662-1|CAA84721.1| 4307|Caenorhabditis elegans Hypothetical protein
            F25F2.2 protein.
          Length = 4307

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 11/23 (47%), Positives = 16/23 (69%)
 Frame = +1

Query: 91   LLFHRDYKYQEPFLSEDQSGKAA 159
            L +HRD +YQ P + ED +G+ A
Sbjct: 2444 LNYHRDKRYQIPLVVEDATGRRA 2466


>Z35599-4|CAA84661.1| 4307|Caenorhabditis elegans Hypothetical protein
            F25F2.2 protein.
          Length = 4307

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 11/23 (47%), Positives = 16/23 (69%)
 Frame = +1

Query: 91   LLFHRDYKYQEPFLSEDQSGKAA 159
            L +HRD +YQ P + ED +G+ A
Sbjct: 2444 LNYHRDKRYQIPLVVEDATGRRA 2466


>Z34802-10|CAA84339.1| 4307|Caenorhabditis elegans Hypothetical
            protein F25F2.2 protein.
          Length = 4307

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 11/23 (47%), Positives = 16/23 (69%)
 Frame = +1

Query: 91   LLFHRDYKYQEPFLSEDQSGKAA 159
            L +HRD +YQ P + ED +G+ A
Sbjct: 2444 LNYHRDKRYQIPLVVEDATGRRA 2466


>U42841-12|AAC48169.2| 1030|Caenorhabditis elegans Gex interacting
           protein protein16, isoform d protein.
          Length = 1030

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 16/42 (38%), Positives = 20/42 (47%)
 Frame = +2

Query: 503 PSHPTPFNPIRKTKPINKTFKPGPEFNQFPIEPLTDLIIQGP 628
           PS P P  P R  +P+   F P   +   PI  L+D I Q P
Sbjct: 483 PSPPPPPQPYRDPEPV---FNPVQVYETRPISALSDQIDQPP 521


>U40799-6|AAA81484.2|  210|Caenorhabditis elegans Ground-like (grd
           related) protein 4 protein.
          Length = 210

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 12/36 (33%), Positives = 19/36 (52%)
 Frame = +2

Query: 503 PSHPTPFNPIRKTKPINKTFKPGPEFNQFPIEPLTD 610
           P  P P  P+    P  +++ P P FNQ+ ++P  D
Sbjct: 72  PMCPPPPPPMPSYSPC-QSYAPAPVFNQYAMQPAND 106


>AC006605-4|AAK85441.2| 1378|Caenorhabditis elegans Hypothetical
           protein C07H6.3 protein.
          Length = 1378

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 18/52 (34%), Positives = 23/52 (44%)
 Frame = +3

Query: 309 QKMNTKLTLLQLFRPAATLHPNLKMTSTTSPPLLSQNHP*SLTRSHNLLLAP 464
           Q     L    L  PA  +HP+   TS TS   LS     + T + +L LAP
Sbjct: 248 QPSRNSLLRRSLRSPAKIIHPSASTTSFTSSARLSTPPRPTTTAAQSLSLAP 299


>U21310-1|AAA62519.1|  997|Caenorhabditis elegans Hypothetical
           protein F40H6.2 protein.
          Length = 997

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 17/54 (31%), Positives = 27/54 (50%)
 Frame = +3

Query: 390 TTSPPLLSQNHP*SLTRSHNLLLAPVQARSHPSHAIQTRLTQHLSTLSGKRNQL 551
           +T+ PL S +   + T++      PVQ  S+PS  +Q    ++  T S  RN L
Sbjct: 308 STATPLSSLSTASTPTKTVGFYTRPVQIVSNPSGGLQGYWIEYFDTSSFPRNPL 361


>L12018-1|AAA65458.1|  518|Caenorhabditis elegans Polk (dna
           polymerase kappa) homologprotein 1 protein.
          Length = 518

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = +2

Query: 503 PSHPTPFNPIRKTKPINKTFKPGPEFN 583
           P  P+  +P RK+  + +TF P  +FN
Sbjct: 365 PGRPSESDPRRKSISVERTFSPTSDFN 391


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,820,222
Number of Sequences: 27780
Number of extensions: 371337
Number of successful extensions: 1307
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1200
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1306
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1518563232
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)