Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30676
(672 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
DQ325109-1|ABD14123.1| 177|Apis mellifera complementary sex det... 26 0.38
DQ325108-1|ABD14122.1| 177|Apis mellifera complementary sex det... 26 0.38
DQ325106-1|ABD14120.1| 177|Apis mellifera complementary sex det... 26 0.38
AY350615-1|AAQ57657.1| 410|Apis mellifera complementary sex det... 26 0.38
DQ325107-1|ABD14121.1| 176|Apis mellifera complementary sex det... 25 0.66
DQ026032-1|AAY87891.1| 566|Apis mellifera nicotinic acetylcholi... 25 0.66
Y13429-1|CAA73841.1| 402|Apis mellifera dopamine receptor, D1 p... 23 3.5
AY500239-1|AAR92109.1| 555|Apis mellifera neuronal nicotinic ac... 23 3.5
AB253415-1|BAE86926.1| 588|Apis mellifera alpha-glucosidase pro... 23 3.5
DQ026034-1|AAY87893.1| 569|Apis mellifera nicotinic acetylcholi... 22 6.1
DQ026033-1|AAY87892.1| 569|Apis mellifera nicotinic acetylcholi... 22 6.1
>DQ325109-1|ABD14123.1| 177|Apis mellifera complementary sex
determiner protein.
Length = 177
Score = 25.8 bits (54), Expect = 0.38
Identities = 16/43 (37%), Positives = 20/43 (46%), Gaps = 3/43 (6%)
Frame = +3
Query: 111 QIPGAIPVGGPVRQGGFRQGRIAP---VPGSIPRVRRPGFARP 230
QIP +PV PV G F + P + IPR R G + P
Sbjct: 110 QIPVPVPVPVPVYYGNFPPRSMGPWISIQEQIPRFRHIGPSTP 152
>DQ325108-1|ABD14122.1| 177|Apis mellifera complementary sex
determiner protein.
Length = 177
Score = 25.8 bits (54), Expect = 0.38
Identities = 16/43 (37%), Positives = 20/43 (46%), Gaps = 3/43 (6%)
Frame = +3
Query: 111 QIPGAIPVGGPVRQGGFRQGRIAP---VPGSIPRVRRPGFARP 230
QIP +PV PV G F + P + IPR R G + P
Sbjct: 110 QIPVPVPVPVPVYYGNFPPRSMGPWISIQEQIPRFRHIGPSTP 152
>DQ325106-1|ABD14120.1| 177|Apis mellifera complementary sex
determiner protein.
Length = 177
Score = 25.8 bits (54), Expect = 0.38
Identities = 16/43 (37%), Positives = 20/43 (46%), Gaps = 3/43 (6%)
Frame = +3
Query: 111 QIPGAIPVGGPVRQGGFRQGRIAP---VPGSIPRVRRPGFARP 230
QIP +PV PV G F + P + IPR R G + P
Sbjct: 110 QIPVPVPVPVPVYYGNFPPRSMGPWISIQEQIPRFRHIGPSTP 152
>AY350615-1|AAQ57657.1| 410|Apis mellifera complementary sex
determiner protein.
Length = 410
Score = 25.8 bits (54), Expect = 0.38
Identities = 16/43 (37%), Positives = 20/43 (46%), Gaps = 3/43 (6%)
Frame = +3
Query: 111 QIPGAIPVGGPVRQGGFRQGRIAP---VPGSIPRVRRPGFARP 230
QIP +PV PV G F + P + IPR R G + P
Sbjct: 343 QIPVPVPVPVPVYYGNFPPRSMGPWISIQEQIPRFRHIGPSTP 385
>DQ325107-1|ABD14121.1| 176|Apis mellifera complementary sex
determiner protein.
Length = 176
Score = 25.0 bits (52), Expect = 0.66
Identities = 15/43 (34%), Positives = 20/43 (46%), Gaps = 3/43 (6%)
Frame = +3
Query: 111 QIPGAIPVGGPVRQGGFRQGRIAP---VPGSIPRVRRPGFARP 230
QIP +P+ PV G F + P + IPR R G + P
Sbjct: 110 QIPVPVPIPVPVYYGNFLPRPMGPWISIQEQIPRFRHIGPSTP 152
>DQ026032-1|AAY87891.1| 566|Apis mellifera nicotinic acetylcholine
receptor alpha3subunit protein.
Length = 566
Score = 25.0 bits (52), Expect = 0.66
Identities = 16/39 (41%), Positives = 20/39 (51%)
Frame = +3
Query: 225 RPSFKSVDASLVQIFSHLMNLRNLLLKNQKMNTKLTLLQ 341
RP DA V+I L L ++ LKNQ M T L + Q
Sbjct: 41 RPVVNVTDALTVKIKLKLSQLIDVNLKNQIMTTNLWVEQ 79
>Y13429-1|CAA73841.1| 402|Apis mellifera dopamine receptor, D1
protein.
Length = 402
Score = 22.6 bits (46), Expect = 3.5
Identities = 9/12 (75%), Positives = 11/12 (91%)
Frame = -1
Query: 564 LKVLLIGFVFLI 529
L VLL+GF+FLI
Sbjct: 23 LSVLLVGFLFLI 34
>AY500239-1|AAR92109.1| 555|Apis mellifera neuronal nicotinic
acetylcholine receptoralpha7-1 protein.
Length = 555
Score = 22.6 bits (46), Expect = 3.5
Identities = 9/21 (42%), Positives = 10/21 (47%)
Frame = +1
Query: 394 HHHHFSAKTTHNL*PVPTIFS 456
HHHH A T H+ P S
Sbjct: 431 HHHHSHAATPHHQHSTPLAHS 451
>AB253415-1|BAE86926.1| 588|Apis mellifera alpha-glucosidase
protein.
Length = 588
Score = 22.6 bits (46), Expect = 3.5
Identities = 11/38 (28%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
Frame = +2
Query: 281 EPAKPVTEEP-EDEYEINTPTAFSSSGYSTPEPQNDFY 391
+P K P +D+Y N + F+ +G++ E + FY
Sbjct: 153 DPVKDDKGNPIKDKYPNNWLSVFNGTGWTFHEGRKQFY 190
>DQ026034-1|AAY87893.1| 569|Apis mellifera nicotinic acetylcholine
receptor alpha4subunit protein.
Length = 569
Score = 21.8 bits (44), Expect = 6.1
Identities = 15/39 (38%), Positives = 19/39 (48%)
Frame = +3
Query: 225 RPSFKSVDASLVQIFSHLMNLRNLLLKNQKMNTKLTLLQ 341
RP + D V I L L ++ LKNQ M T L + Q
Sbjct: 45 RPVVNTSDVLRVCIKLKLSQLIDVNLKNQIMTTNLWVEQ 83
>DQ026033-1|AAY87892.1| 569|Apis mellifera nicotinic acetylcholine
receptor alpha4subunit protein.
Length = 569
Score = 21.8 bits (44), Expect = 6.1
Identities = 15/39 (38%), Positives = 19/39 (48%)
Frame = +3
Query: 225 RPSFKSVDASLVQIFSHLMNLRNLLLKNQKMNTKLTLLQ 341
RP + D V I L L ++ LKNQ M T L + Q
Sbjct: 45 RPVVNTSDVLRVCIKLKLSQLIDVNLKNQIMTTNLWVEQ 83
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 191,231
Number of Sequences: 438
Number of extensions: 4681
Number of successful extensions: 20
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20343105
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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