Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30676
         (672 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g79830.1 68414.m09326 expressed protein weak similarity to TA...    31   0.70 
At5g65683.1 68418.m08265 zinc finger (C3HC4-type RING finger) fa...    30   1.2  
At5g52740.1 68418.m06546 heavy-metal-associated domain-containin...    30   1.6  
At5g43820.1 68418.m05358 pentatricopeptide (PPR) repeat-containi...    29   2.1  
At3g20680.1 68416.m02617 expressed protein                             29   2.1  
At3g28470.1 68416.m03557 myb family transcription factor (MYB35)...    28   4.9  
At3g54800.1 68416.m06064 pleckstrin homology (PH) domain-contain...    28   6.5  
At3g07990.1 68416.m00976 serine carboxypeptidase S10 family prot...    27   8.6  
At2g15880.1 68415.m01820 leucine-rich repeat family protein / ex...    27   8.6  
At1g79470.1 68414.m09262 inosine-5'-monophosphate dehydrogenase ...    27   8.6  

>At1g79830.1 68414.m09326 expressed protein weak similarity to TATA
           element modulatory factor (TMF) (Swiss-Prot:P82094)
           [Homo sapiens]
          Length = 927

 Score = 31.1 bits (67), Expect = 0.70
 Identities = 18/49 (36%), Positives = 25/49 (51%), Gaps = 2/49 (4%)
 Frame = +2

Query: 278 DEPAKPVTEEPEDEYEINTPTAFSSSGYSTPEPQNDFYDITTT--SQPK 418
           DEP   +  E   EY + TP    SSGY T    N+  ++T +  SQP+
Sbjct: 147 DEPQSQILLEESSEYSLQTP---ESSGYKTSLQPNEKLEMTASQDSQPE 192


>At5g65683.1 68418.m08265 zinc finger (C3HC4-type RING finger)
           family protein contains Pfam profiles PF00097: Zinc
           finger, C3HC4 type (RING finger), PF00092: von
           Willebrand factor type A domain
          Length = 717

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 22/85 (25%), Positives = 37/85 (43%)
 Frame = +2

Query: 89  LSYSTETTNTRSHSCRRTSQARRLQARKDSTGAWFNS*SKKTRICQTVF*IRGCLTRPNL 268
           +S S E        CR  + +RRL  R+D +GA+    + ++    +   +R      N 
Sbjct: 601 VSSSIERLRNLHSMCRAVADSRRLIEREDLSGAYQVLTTARSNASHSDDSLRSLEVELNE 660

Query: 269 QSLDEPAKPVTEEPEDEYEINTPTA 343
            S  +P   +    ED+ E  TPT+
Sbjct: 661 LSRIKPRNSILNRTEDKPEQLTPTS 685


>At5g52740.1 68418.m06546 heavy-metal-associated domain-containing
           protein  contains Pfam profile PF00403:
           Heavy-metal-associated domain
          Length = 118

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 15/44 (34%), Positives = 21/44 (47%)
 Frame = +2

Query: 206 KKTRICQTVF*IRGCLTRPNLQSLDEPAKPVTEEPEDEYEINTP 337
           K  +IC T F   G +  P  +  D+P KP T+ P+  Y    P
Sbjct: 53  KLKKICHTEFISVGPVKEPEKKKPDDPKKPETKPPDVIYHYVPP 96


>At5g43820.1 68418.m05358 pentatricopeptide (PPR) repeat-containing
           protein low similarity to fertility restorer [Petunia x
           hybrida] GI:22128587; contains Pfam profile PF01535: PPR
           repeat
          Length = 680

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = -3

Query: 211 LLTLGIEPGTGAILPCLKPPCLTGPP 134
           +L+ G+ P TG +   LKP C  GPP
Sbjct: 386 MLSRGVLPTTGLVTSFLKPLCSYGPP 411


>At3g20680.1 68416.m02617 expressed protein
          Length = 338

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 22/60 (36%), Positives = 33/60 (55%)
 Frame = +3

Query: 228 PSFKSVDASLVQIFSHLMNLRNLLLKNQKMNTKLTLLQLFRPAATLHPNLKMTSTTSPPL 407
           PS  S+     +IF HL   ++L  ++ K+N K T  +LF P   L  +L   S++SPPL
Sbjct: 19  PSPPSLSPPNSRIF-HLHFSKSLSQQHSKLNHKSTTTRLFAP---LCSSLPSPSSSSPPL 74


>At3g28470.1 68416.m03557 myb family transcription factor (MYB35)
           similar to Atmyb103 GB:AAD40692 from [Arabidopsis
           thaliana]; contains PFAM profile: myb DNA binding domain
           PF00249
          Length = 317

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 19/69 (27%), Positives = 29/69 (42%), Gaps = 1/69 (1%)
 Frame = +3

Query: 387 STTSPPLLSQNHP*SLTRSHNLLLAPVQARSHPSHAIQTRLTQHLSTLSGKRNQLTKPSN 566
           +TT+      N P   T S      P    SHP+H +    T    + S     +T+P+ 
Sbjct: 170 TTTNHESYYTNSPMMFTNSSEYQTTPFHFYSHPNHLLNG--TTSSCSSSSSSTSITQPNQ 227

Query: 567 LAQN-LTNF 590
           + Q  +TNF
Sbjct: 228 VPQTPVTNF 236


>At3g54800.1 68416.m06064 pleckstrin homology (PH) domain-containing
           protein / lipid-binding START domain-containing protein
           contains Pfam profiles PF00169: Pleckstring homology
           (PH) domain, PF01852: Lipid-binding START domain
          Length = 733

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 14/50 (28%), Positives = 25/50 (50%)
 Frame = +2

Query: 248 CLTRPNLQSLDEPAKPVTEEPEDEYEINTPTAFSSSGYSTPEPQNDFYDI 397
           CL++ N   L   AK V  E     E++ PT+  +S     +  ++F+D+
Sbjct: 391 CLSKINTMPLKTEAKEVDLETMHAEEMDKPTSARNSLMDLNDASDEFFDV 440


>At3g07990.1 68416.m00976 serine carboxypeptidase S10 family protein
           similar to serine carboxypeptidase II (CP-MII)
           GB:CAA70815 [Hordeum vulgare]
          Length = 459

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 14/31 (45%), Positives = 15/31 (48%)
 Frame = -1

Query: 585 WLNSGPGLKVLLIGFVFLIGLKGVG*DGSVL 493
           WLN GPG   +  G    IG   VG DG  L
Sbjct: 84  WLNGGPGCSSVAYGAAEEIGPFRVGSDGKTL 114


>At2g15880.1 68415.m01820 leucine-rich repeat family protein /
           extensin family protein similar to extensin-like protein
           [Lycopersicon esculentum] gi|5917664|gb|AAD55979;
           contains leucine-rich repeats, Pfam:PF00560; contains
           proline rich extensin domains, INTERPRO:IPR002965
          Length = 727

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 9/29 (31%), Positives = 17/29 (58%)
 Frame = +2

Query: 512 PTPFNPIRKTKPINKTFKPGPEFNQFPIE 598
           P P  P+ K +P  ++ +P   +NQ P++
Sbjct: 400 PVPTRPVHKPQPPKESPQPNDPYNQSPVK 428


>At1g79470.1 68414.m09262 inosine-5'-monophosphate dehydrogenase
           identical to inosine-5'-monophosphate dehydrogenase
           SP|P47996 {Arabidopsis thaliana}
          Length = 503

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = -3

Query: 172 LPCLKPPCLTGPPTGMAPGICSLGGIG 92
           +PC+  P  T   + MA  + SLGGIG
Sbjct: 53  IPCVSSPMDTVSESHMAAAMASLGGIG 79


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,220,320
Number of Sequences: 28952
Number of extensions: 349283
Number of successful extensions: 1147
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1063
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1146
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1422784080
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)