Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30673
         (717 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ223627-1|CAA11500.1|  371|Tribolium castaneum orthodenticle-1 ...    27   0.20 
DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    24   1.1  
U14732-1|AAC46491.1|  322|Tribolium castaneum fushi-tarazu protein.    23   3.3  
AM292337-1|CAL23149.2|  452|Tribolium castaneum gustatory recept...    22   5.7  
AF322227-1|AAK01654.1|  782|Tribolium castaneum cell surface pro...    22   5.7  
AF317551-1|AAG39634.1|  312|Tribolium castaneum distal-less prot...    22   5.7  
DQ855491-1|ABH88178.1|  144|Tribolium castaneum chemosensory pro...    21   7.6  

>AJ223627-1|CAA11500.1|  371|Tribolium castaneum orthodenticle-1
           protein protein.
          Length = 371

 Score = 26.6 bits (56), Expect = 0.20
 Identities = 14/43 (32%), Positives = 25/43 (58%)
 Frame = -3

Query: 604 SSAPLTVRLQRSSMPTFFVILLEGSQVPHGASKNSPSSIPSPT 476
           S++P TV +++ S P        G+  PHG++ +S  + PSP+
Sbjct: 230 SASPPTVNIKKES-PQMQSYRPTGNITPHGSNTSSLITTPSPS 271


>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 protein.
          Length = 2700

 Score = 24.2 bits (50), Expect = 1.1
 Identities = 10/39 (25%), Positives = 19/39 (48%)
 Frame = +2

Query: 2    WTSPSSRLTWCLTPVSTSHWSRTRQSSLPRRPTMNSFPS 118
            W+S ++   W  T    +  +R   +S   RPT  ++P+
Sbjct: 1043 WSSTTTSPWWTTTTTRRTTTTRPTTTSTTTRPTTTNWPT 1081



 Score = 22.6 bits (46), Expect = 3.3
 Identities = 8/20 (40%), Positives = 11/20 (55%)
 Frame = +2

Query: 41   PVSTSHWSRTRQSSLPRRPT 100
            P +T+HW     +S   RPT
Sbjct: 1177 PSTTNHWQTKTTTSTTTRPT 1196



 Score = 22.6 bits (46), Expect = 3.3
 Identities = 12/38 (31%), Positives = 18/38 (47%)
 Frame = +1

Query: 247  IATSKPSVLSNSSTGVQPVSRSVSTTSHPPWCPEATWP 360
            + T+KP+  S +S          STT++P W P    P
Sbjct: 1340 VTTAKPAQ-STTSVSTTTSWNPGSTTNYPEWQPTEWHP 1376


>U14732-1|AAC46491.1|  322|Tribolium castaneum fushi-tarazu protein.
          Length = 322

 Score = 22.6 bits (46), Expect = 3.3
 Identities = 13/63 (20%), Positives = 24/63 (38%)
 Frame = +2

Query: 35  LTPVSTSHWSRTRQSSLPRRPTMNSFPSPRSQTHASSPPTRW*NATPVMASTWLAVCCTV 214
           L P  TS     R         + +   PR +   +       N   ++ +TW+++ C  
Sbjct: 258 LHPAETSMNDANRNDCAKPLTQIRNIRGPRKRLRFAYVTRTGANIKKLIVNTWISLFCVK 317

Query: 215 VTS 223
           VT+
Sbjct: 318 VTN 320


>AM292337-1|CAL23149.2|  452|Tribolium castaneum gustatory receptor
           candidate 16 protein.
          Length = 452

 Score = 21.8 bits (44), Expect = 5.7
 Identities = 8/15 (53%), Positives = 9/15 (60%)
 Frame = +2

Query: 191 WLAVCCTVVTSYPRM 235
           W  VC  VV  YPR+
Sbjct: 166 WREVCTFVVQVYPRL 180


>AF322227-1|AAK01654.1|  782|Tribolium castaneum cell surface
           protein chaoptin protein.
          Length = 782

 Score = 21.8 bits (44), Expect = 5.7
 Identities = 8/13 (61%), Positives = 10/13 (76%)
 Frame = -1

Query: 156 LVGGLEACVCDLG 118
           L+GG  +C CDLG
Sbjct: 703 LMGGKWSCDCDLG 715


>AF317551-1|AAG39634.1|  312|Tribolium castaneum distal-less
           protein.
          Length = 312

 Score = 21.8 bits (44), Expect = 5.7
 Identities = 9/20 (45%), Positives = 11/20 (55%)
 Frame = -3

Query: 211 GTAYSKPCTCHDGGRISPSG 152
           G A++ P   HD G  SP G
Sbjct: 50  GNAHTGPTGTHDAGFPSPRG 69


>DQ855491-1|ABH88178.1|  144|Tribolium castaneum chemosensory
           protein 5 protein.
          Length = 144

 Score = 21.4 bits (43), Expect = 7.6
 Identities = 8/19 (42%), Positives = 11/19 (57%)
 Frame = -3

Query: 691 FVIFNFNREW*KTVADCRP 635
           FV+ N+  EW + VA   P
Sbjct: 102 FVLLNYRNEWNQLVAKYDP 120


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 192,347
Number of Sequences: 336
Number of extensions: 4302
Number of successful extensions: 21
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 19051215
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)