Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30673
(717 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha 2|Schizosacchar... 151 1e-37
SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|ch... 148 7e-37
SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces... 73 4e-14
SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|... 38 0.002
SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr 1||... 32 0.071
SPCC18.03 |||shuttle craft like transcriptional regulator|Schizo... 28 1.2
SPBPB7E8.02 |||PSP1 family protein|Schizosaccharomyces pombe|chr... 28 1.5
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 28 1.5
SPBC1539.09c |trp1||anthranilate synthase component II|Schizosac... 27 2.0
SPAC222.10c |byr4||two-component GAP Byr4|Schizosaccharomyces po... 27 3.5
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 27 3.5
SPAC3H5.08c |||WD repeat protein Wdr44 family|Schizosaccharomyce... 26 4.7
SPAC1006.06 |rgf2||RhoGEF Rgf2|Schizosaccharomyces pombe|chr 1||... 26 4.7
SPBC428.10 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 26 6.2
SPAC30D11.13 |hus5|ubc9|SUMO conjugating enzyme Hus5|Schizosacch... 26 6.2
SPAC890.02c |alp7|mia1|TACC homolog |Schizosaccharomyces pombe|c... 26 6.2
SPAC1296.06 |||NADPH cytochrome reductase|Schizosaccharomyces po... 25 8.2
>SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha
2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 449
Score = 151 bits (366), Expect = 1e-37
Identities = 66/87 (75%), Positives = 74/87 (85%)
Frame = +1
Query: 1 VDLTEFQTNLVPYSRIHFPLVTYAPVISAEKAYHEQLSVAEITNACFEPANQMVKCDPRH 180
VDL EFQTNLVPY RIHFPLVTYAP++SA KA+HE SV EITN CFEP NQMVKCDPR
Sbjct: 250 VDLAEFQTNLVPYPRIHFPLVTYAPIVSAAKAFHESNSVQEITNQCFEPYNQMVKCDPRA 309
Query: 181 GKYMACCMLYRGDVVPKDVNAAIATSK 261
G+YMA C+LYRGDV+P+DV AA+ T K
Sbjct: 310 GRYMATCLLYRGDVIPRDVQAAVTTIK 336
Score = 138 bits (333), Expect = 1e-33
Identities = 59/75 (78%), Positives = 67/75 (89%)
Frame = +3
Query: 255 IKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHK 434
IK KRTIQFVDWCPTGFK+GI +PP + G ++AKV RAVCMLSNTT+IAEAW+RLDHK
Sbjct: 335 IKAKRTIQFVDWCPTGFKIGICDRPPQHIEGSEIAKVDRAVCMLSNTTSIAEAWSRLDHK 394
Query: 435 FDLMYAKRAFVHWYV 479
FDLMY+KRAFVHWYV
Sbjct: 395 FDLMYSKRAFVHWYV 409
>SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 455
Score = 148 bits (359), Expect = 7e-37
Identities = 64/87 (73%), Positives = 74/87 (85%)
Frame = +1
Query: 1 VDLTEFQTNLVPYSRIHFPLVTYAPVISAEKAYHEQLSVAEITNACFEPANQMVKCDPRH 180
VDL EFQTNLVPY RIHFPLVTY+P++SA KA+HE SV EITN CFEP NQMVKCDPR
Sbjct: 254 VDLNEFQTNLVPYPRIHFPLVTYSPIVSAAKAFHESNSVQEITNQCFEPYNQMVKCDPRT 313
Query: 181 GKYMACCMLYRGDVVPKDVNAAIATSK 261
G+YMA C+LYRGDV+P+DV AA+ + K
Sbjct: 314 GRYMATCLLYRGDVIPRDVQAAVTSIK 340
Score = 144 bits (348), Expect = 1e-35
Identities = 61/75 (81%), Positives = 69/75 (92%)
Frame = +3
Query: 255 IKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHK 434
IK++RTIQFVDWCPTGFK+GI Y+PP VPG +AKV RAVCMLSNTT+IAEAW+RLDHK
Sbjct: 339 IKSRRTIQFVDWCPTGFKIGICYEPPQHVPGSGIAKVNRAVCMLSNTTSIAEAWSRLDHK 398
Query: 435 FDLMYAKRAFVHWYV 479
FDLMY+KRAFVHWYV
Sbjct: 399 FDLMYSKRAFVHWYV 413
>SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 448
Score = 72.9 bits (171), Expect = 4e-14
Identities = 32/82 (39%), Positives = 50/82 (60%)
Frame = +1
Query: 4 DLTEFQTNLVPYSRIHFPLVTYAPVISAEKAYHEQLSVAEITNACFEPANQMVKCDPRHG 183
DL + N+VP+ R+HF +V +AP+ + + + +SV E+T F+ N MV DPRHG
Sbjct: 249 DLRKLAVNMVPFPRLHFFMVGFAPLAAIGSSSFQAVSVPELTQQMFDANNMMVAADPRHG 308
Query: 184 KYMACCMLYRGDVVPKDVNAAI 249
+Y+ L+RG V K+V+ I
Sbjct: 309 RYLTVAALFRGKVSMKEVDEQI 330
Score = 47.2 bits (107), Expect = 2e-06
Identities = 24/76 (31%), Positives = 40/76 (52%)
Frame = +3
Query: 249 RYIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLD 428
R ++TK + FV+W P + PP DL + + + N+T+I E + RL
Sbjct: 331 RSVQTKNSAYFVEWIPDNVLKAVCSVPPK-----DL---KMSATFIGNSTSIQEIFRRLG 382
Query: 429 HKFDLMYAKRAFVHWY 476
+F M+ ++AF+HWY
Sbjct: 383 DQFSAMFRRKAFLHWY 398
>SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 446
Score = 37.5 bits (83), Expect = 0.002
Identities = 22/86 (25%), Positives = 41/86 (47%), Gaps = 4/86 (4%)
Frame = +1
Query: 4 DLTEFQTNLVPYSRIHFPLVTYAPVIS---AEKAYHEQLSVAEITNACFEPANQMVKCDP 174
DL +L+P R HF L +Y P + E + +V ++ P NQMV +P
Sbjct: 252 DLVSIIASLIPSPRCHFLLTSYTPFTNQQVEEAKAIRKTTVLDVMRRLLLPKNQMVSVNP 311
Query: 175 -RHGKYMACCMLYRGDVVPKDVNAAI 249
+ +++ + +G+ P DV+ ++
Sbjct: 312 SKKSCFISILDIIQGEADPADVHKSL 337
>SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr
1|||Manual
Length = 3227
Score = 32.3 bits (70), Expect = 0.071
Identities = 21/74 (28%), Positives = 35/74 (47%)
Frame = -1
Query: 255 CSDGRVHILGYDVTTVQHTASHVLAMTGVAFHHLVGGLEACVCDLGDGKLFMVGLLGRDD 76
CS G +LGY ++ A++V+A + V HL+ G D + K G D
Sbjct: 406 CSAGLTSLLGYHLSVKTPQATYVVARSIVMLDHLIDGYSMAFPDFSESK-------GLDM 458
Query: 75 WRVRDQWEVDTGVR 34
R Q+E++ G++
Sbjct: 459 LVDRVQYELEAGLQ 472
>SPCC18.03 |||shuttle craft like transcriptional
regulator|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1077
Score = 28.3 bits (60), Expect = 1.2
Identities = 14/42 (33%), Positives = 18/42 (42%)
Frame = +1
Query: 124 ITNACFEPANQMVKCDPRHGKYMACCMLYRGDVVPKDVNAAI 249
+ ACFEP N C H K C L + KD N ++
Sbjct: 361 LCGACFEPINAKCYCG-LHSKTYPCSSLPSPSISKKDENGSV 401
>SPBPB7E8.02 |||PSP1 family protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 749
Score = 27.9 bits (59), Expect = 1.5
Identities = 19/79 (24%), Positives = 36/79 (45%)
Frame = -3
Query: 580 LQRSSMPTFFVILLEGSQVPHGASKNSPSSIPSPTYQCTKARLAYMRSNLWSRRAQASAM 401
L S MP+ F L S + N PS+IP+P+ + A + +L + + S+
Sbjct: 134 LPPSEMPSHFHPLWSKSASKDSNAFNDPSAIPNPSPLFSSAYATRINGSLRNDKWNRSSF 193
Query: 400 AVVLDNMQTAR*TLAKSPP 344
+ L + + +R + + P
Sbjct: 194 SEALSSSRFSRPQVGQQQP 212
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 27.9 bits (59), Expect = 1.5
Identities = 17/49 (34%), Positives = 26/49 (53%)
Frame = +2
Query: 11 PSSRLTWCLTPVSTSHWSRTRQSSLPRRPTMNSFPSPRSQTHASSPPTR 157
P+++ P S + T +SS+P P N+ PSP S + AS+ P R
Sbjct: 1232 PTAKAPPVPAPSSEAPSVSTPRSSVPS-PHSNASPSPTSSSMASAAPAR 1279
>SPBC1539.09c |trp1||anthranilate synthase component
II|Schizosaccharomyces pombe|chr 2|||Manual
Length = 759
Score = 27.5 bits (58), Expect = 2.0
Identities = 15/45 (33%), Positives = 25/45 (55%)
Frame = +1
Query: 163 KCDPRHGKYMACCMLYRGDVVPKDVNAAIATSKPSVLSNSSTGVQ 297
K D ++ + G + PK+V AI+ S+P+V+ SS GV+
Sbjct: 696 KVDWEAASFIPVSYVLAGGLTPKNVQDAISVSRPAVVDVSS-GVE 739
>SPAC222.10c |byr4||two-component GAP Byr4|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 665
Score = 26.6 bits (56), Expect = 3.5
Identities = 14/43 (32%), Positives = 23/43 (53%), Gaps = 2/43 (4%)
Frame = +1
Query: 217 DVVPKDVNAAIATSKPSVLSNSST--GVQPVSRSVSTTSHPPW 339
D +D + I+ S+P+++SN ST G+Q V V + W
Sbjct: 522 DYAIRDFDTPISPSRPALISNISTKKGIQVVGNMVYDPTRLRW 564
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 26.6 bits (56), Expect = 3.5
Identities = 16/41 (39%), Positives = 23/41 (56%)
Frame = +1
Query: 238 NAAIATSKPSVLSNSSTGVQPVSRSVSTTSHPPWCPEATWP 360
+++ ATS S S SS+ V+ S ST S PP P ++P
Sbjct: 661 SSSTATSSTSFASESSSFYSNVTTSSSTVSTPP--PTTSFP 699
Score = 26.2 bits (55), Expect = 4.7
Identities = 20/77 (25%), Positives = 36/77 (46%), Gaps = 2/77 (2%)
Frame = +2
Query: 5 TSPSSRLTWCLTPVSTSHWSRTRQSSLPRRPTM--NSFPSPRSQTHASSPPTRW*NATPV 178
TS S L+ + +++ T S+ P PT+ S +P + T+ ++ + +TPV
Sbjct: 381 TSSSPLLSTSTSCTTSTSIPPTGNSTTPVTPTVPPTSSSTPLTTTNCTTSTSVPYTSTPV 440
Query: 179 MASTWLAVCCTVVTSYP 229
++ CT TS P
Sbjct: 441 TSTPLATTNCTTSTSVP 457
>SPAC3H5.08c |||WD repeat protein Wdr44 family|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 855
Score = 26.2 bits (55), Expect = 4.7
Identities = 12/30 (40%), Positives = 19/30 (63%)
Frame = +1
Query: 241 AAIATSKPSVLSNSSTGVQPVSRSVSTTSH 330
AAI+ + SV+SN+S P R++ + SH
Sbjct: 568 AAISARRSSVISNASIETGPSLRNLKSLSH 597
>SPAC1006.06 |rgf2||RhoGEF Rgf2|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1158
Score = 26.2 bits (55), Expect = 4.7
Identities = 11/28 (39%), Positives = 17/28 (60%)
Frame = +2
Query: 74 QSSLPRRPTMNSFPSPRSQTHASSPPTR 157
+ SLPRRP+ +P S T ++ PP +
Sbjct: 738 RGSLPRRPSSALLTNPISITKSNPPPVK 765
>SPBC428.10 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 751
Score = 25.8 bits (54), Expect = 6.2
Identities = 16/47 (34%), Positives = 26/47 (55%)
Frame = +2
Query: 8 SPSSRLTWCLTPVSTSHWSRTRQSSLPRRPTMNSFPSPRSQTHASSP 148
SPS LT L S++ S + + + R+ T +S SP+ Q+ S+P
Sbjct: 619 SPSKMLT-TLRNNSSTFPSLRKNAMIARKSTADSLSSPKRQSVPSTP 664
>SPAC30D11.13 |hus5|ubc9|SUMO conjugating enzyme
Hus5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 157
Score = 25.8 bits (54), Expect = 6.2
Identities = 10/20 (50%), Positives = 11/20 (55%)
Frame = -3
Query: 229 WVRRHHGTAYSKPCTCHDGG 170
W R H Y+KPC DGG
Sbjct: 16 WRRDHPFGFYAKPCKSSDGG 35
>SPAC890.02c |alp7|mia1|TACC homolog |Schizosaccharomyces pombe|chr
1|||Manual
Length = 474
Score = 25.8 bits (54), Expect = 6.2
Identities = 16/51 (31%), Positives = 31/51 (60%)
Frame = +2
Query: 35 LTPVSTSHWSRTRQSSLPRRPTMNSFPSPRSQTHASSPPTRW*NATPVMAS 187
LTP + S +S + +S +R ++N+ PS + +H+SS T + PV+++
Sbjct: 130 LTPKNPSLFSSSNAAS--QRGSLNTAPSNFAYSHSSSLQTSASSRPPVLSN 178
>SPAC1296.06 |||NADPH cytochrome reductase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 558
Score = 25.4 bits (53), Expect = 8.2
Identities = 9/29 (31%), Positives = 18/29 (62%)
Frame = +1
Query: 217 DVVPKDVNAAIATSKPSVLSNSSTGVQPV 303
D++P +N + ++KP ++ TGV P+
Sbjct: 399 DILPGFLNLSYQSNKPLIMVGPGTGVAPL 427
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,291,226
Number of Sequences: 5004
Number of extensions: 71740
Number of successful extensions: 263
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 242
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 262
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 335201398
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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