Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30673
(717 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g14960.2 68417.m02299 tubulin alpha-6 chain (TUA6) nearly ide... 161 6e-40
At4g14960.1 68417.m02298 tubulin alpha-6 chain (TUA6) nearly ide... 161 6e-40
At1g50010.1 68414.m05612 tubulin alpha-2/alpha-4 chain (TUA2) id... 161 6e-40
At1g04820.1 68414.m00478 tubulin alpha-2/alpha-4 chain (TUA4) ne... 161 6e-40
At5g19780.1 68418.m02351 tubulin alpha-3/alpha-5 chain (TUA5) ne... 159 2e-39
At5g19770.1 68418.m02350 tubulin alpha-3/alpha-5 chain (TUA3) ne... 159 2e-39
At1g64740.1 68414.m07340 tubulin alpha-1 chain (TUA1) nearly ide... 151 3e-37
At5g62700.1 68418.m07868 tubulin beta-2/beta-3 chain (TUB3) near... 71 1e-12
At5g62690.1 68418.m07867 tubulin beta-2/beta-3 chain (TUB2) near... 71 1e-12
At2g29550.1 68415.m03589 tubulin beta-7 chain (TUB7) identical t... 71 1e-12
At5g23860.1 68418.m02801 tubulin beta-8 chain (TUB8) (TUBB8) ide... 70 1e-12
At5g44340.1 68418.m05429 tubulin beta-4 chain (TUB4) nearly iden... 69 2e-12
At4g20890.1 68417.m03029 tubulin beta-9 chain (TUB9) nearly iden... 69 2e-12
At1g20010.1 68414.m02506 tubulin beta-5 chain (TUB5) nearly iden... 69 2e-12
At1g75780.1 68414.m08801 tubulin beta-1 chain (TUB1) nearly iden... 69 3e-12
At5g12250.1 68418.m01439 tubulin beta-6 chain (TUB6) nearly iden... 69 4e-12
At5g05620.1 68418.m00612 tubulin gamma-2 chain / gamma-2 tubulin... 34 0.082
At3g62210.1 68416.m06989 expressed protein contains Pfam profile... 33 0.25
At3g61650.1 68416.m06909 tubulin gamma-1 chain / gamma-1 tubulin... 33 0.25
At2g28510.1 68415.m03464 Dof-type zinc finger domain-containing ... 28 5.4
At1g62870.1 68414.m07099 expressed protein 28 5.4
At1g56130.1 68414.m06445 leucine-rich repeat family protein / pr... 28 5.4
At3g21540.1 68416.m02717 transducin family protein / WD-40 repea... 28 7.1
At1g64080.1 68414.m07259 expressed protein identical to hypothet... 28 7.1
At3g11690.1 68416.m01433 expressed protein 27 9.4
At1g21090.1 68414.m02638 hydroxyproline-rich glycoprotein family... 27 9.4
>At4g14960.2 68417.m02299 tubulin alpha-6 chain (TUA6) nearly
identical to SP|P29511 Tubulin alpha-6 chain
{Arabidopsis thaliana}
Length = 450
Score = 161 bits (390), Expect = 6e-40
Identities = 71/87 (81%), Positives = 79/87 (90%)
Frame = +1
Query: 1 VDLTEFQTNLVPYSRIHFPLVTYAPVISAEKAYHEQLSVAEITNACFEPANQMVKCDPRH 180
VD+TEFQTNLVPY RIHF L +YAPVISAEKA+HEQLSVAEITN+ FEPA+ M KCDPRH
Sbjct: 250 VDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAFHEQLSVAEITNSAFEPASMMAKCDPRH 309
Query: 181 GKYMACCMLYRGDVVPKDVNAAIATSK 261
GKYMACC++YRGDVVPKDVNAA+ T K
Sbjct: 310 GKYMACCLMYRGDVVPKDVNAAVGTIK 336
Score = 155 bits (376), Expect = 3e-38
Identities = 66/75 (88%), Positives = 73/75 (97%)
Frame = +3
Query: 255 IKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHK 434
IKTKRTIQFVDWCPTGFK GINYQPPTVVPGGDLAKVQRAVCM+SN+T++AE ++R+DHK
Sbjct: 335 IKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHK 394
Query: 435 FDLMYAKRAFVHWYV 479
FDLMYAKRAFVHWYV
Sbjct: 395 FDLMYAKRAFVHWYV 409
>At4g14960.1 68417.m02298 tubulin alpha-6 chain (TUA6) nearly
identical to SP|P29511 Tubulin alpha-6 chain
{Arabidopsis thaliana}
Length = 427
Score = 161 bits (390), Expect = 6e-40
Identities = 71/87 (81%), Positives = 79/87 (90%)
Frame = +1
Query: 1 VDLTEFQTNLVPYSRIHFPLVTYAPVISAEKAYHEQLSVAEITNACFEPANQMVKCDPRH 180
VD+TEFQTNLVPY RIHF L +YAPVISAEKA+HEQLSVAEITN+ FEPA+ M KCDPRH
Sbjct: 250 VDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAFHEQLSVAEITNSAFEPASMMAKCDPRH 309
Query: 181 GKYMACCMLYRGDVVPKDVNAAIATSK 261
GKYMACC++YRGDVVPKDVNAA+ T K
Sbjct: 310 GKYMACCLMYRGDVVPKDVNAAVGTIK 336
Score = 109 bits (262), Expect = 2e-24
Identities = 47/52 (90%), Positives = 51/52 (98%)
Frame = +3
Query: 255 IKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAE 410
IKTKRTIQFVDWCPTGFK GINYQPPTVVPGGDLAKVQRAVCM+SN+T++AE
Sbjct: 335 IKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAE 386
>At1g50010.1 68414.m05612 tubulin alpha-2/alpha-4 chain (TUA2)
identical to tubulin alpha-2/alpha-4 chain SP|P29510
GB:P29510 from [Arabidopsis thaliana]
Length = 450
Score = 161 bits (390), Expect = 6e-40
Identities = 71/87 (81%), Positives = 79/87 (90%)
Frame = +1
Query: 1 VDLTEFQTNLVPYSRIHFPLVTYAPVISAEKAYHEQLSVAEITNACFEPANQMVKCDPRH 180
VD+TEFQTNLVPY RIHF L +YAPVISAEKA+HEQLSVAEITN+ FEPA+ M KCDPRH
Sbjct: 250 VDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAFHEQLSVAEITNSAFEPASMMAKCDPRH 309
Query: 181 GKYMACCMLYRGDVVPKDVNAAIATSK 261
GKYMACC++YRGDVVPKDVNAA+ T K
Sbjct: 310 GKYMACCLMYRGDVVPKDVNAAVGTIK 336
Score = 155 bits (376), Expect = 3e-38
Identities = 66/75 (88%), Positives = 73/75 (97%)
Frame = +3
Query: 255 IKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHK 434
IKTKRTIQFVDWCPTGFK GINYQPPTVVPGGDLAKVQRAVCM+SN+T++AE ++R+DHK
Sbjct: 335 IKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHK 394
Query: 435 FDLMYAKRAFVHWYV 479
FDLMYAKRAFVHWYV
Sbjct: 395 FDLMYAKRAFVHWYV 409
>At1g04820.1 68414.m00478 tubulin alpha-2/alpha-4 chain (TUA4)
nearly identical to SP:P29510 Tubulin alpha-2/alpha-4
chain from [Arabidopsis thaliana]
Length = 450
Score = 161 bits (390), Expect = 6e-40
Identities = 71/87 (81%), Positives = 79/87 (90%)
Frame = +1
Query: 1 VDLTEFQTNLVPYSRIHFPLVTYAPVISAEKAYHEQLSVAEITNACFEPANQMVKCDPRH 180
VD+TEFQTNLVPY RIHF L +YAPVISAEKA+HEQLSVAEITN+ FEPA+ M KCDPRH
Sbjct: 250 VDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAFHEQLSVAEITNSAFEPASMMAKCDPRH 309
Query: 181 GKYMACCMLYRGDVVPKDVNAAIATSK 261
GKYMACC++YRGDVVPKDVNAA+ T K
Sbjct: 310 GKYMACCLMYRGDVVPKDVNAAVGTIK 336
Score = 155 bits (376), Expect = 3e-38
Identities = 66/75 (88%), Positives = 73/75 (97%)
Frame = +3
Query: 255 IKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHK 434
IKTKRTIQFVDWCPTGFK GINYQPPTVVPGGDLAKVQRAVCM+SN+T++AE ++R+DHK
Sbjct: 335 IKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHK 394
Query: 435 FDLMYAKRAFVHWYV 479
FDLMYAKRAFVHWYV
Sbjct: 395 FDLMYAKRAFVHWYV 409
>At5g19780.1 68418.m02351 tubulin alpha-3/alpha-5 chain (TUA5)
nearly identical to SP|P20363 Tubulin alpha-3/alpha-5
chain {Arabidopsis thaliana}
Length = 450
Score = 159 bits (386), Expect = 2e-39
Identities = 71/87 (81%), Positives = 77/87 (88%)
Frame = +1
Query: 1 VDLTEFQTNLVPYSRIHFPLVTYAPVISAEKAYHEQLSVAEITNACFEPANQMVKCDPRH 180
VD+TEFQTNLVPY RIHF L +YAPVISA KAYHEQLSV EITNA FEPA+ M KCDPRH
Sbjct: 250 VDITEFQTNLVPYPRIHFMLSSYAPVISAAKAYHEQLSVPEITNAVFEPASMMAKCDPRH 309
Query: 181 GKYMACCMLYRGDVVPKDVNAAIATSK 261
GKYMACC++YRGDVVPKDVNAA+ T K
Sbjct: 310 GKYMACCLMYRGDVVPKDVNAAVGTIK 336
Score = 155 bits (377), Expect = 2e-38
Identities = 66/75 (88%), Positives = 72/75 (96%)
Frame = +3
Query: 255 IKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHK 434
IKTKRT+QFVDWCPTGFK GINYQPPTVVPGGDLAKVQRAVCM+SN TA+AE ++R+DHK
Sbjct: 335 IKTKRTVQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNNTAVAEVFSRIDHK 394
Query: 435 FDLMYAKRAFVHWYV 479
FDLMYAKRAFVHWYV
Sbjct: 395 FDLMYAKRAFVHWYV 409
>At5g19770.1 68418.m02350 tubulin alpha-3/alpha-5 chain (TUA3)
nearly identical to SP|P20363 Tubulin alpha-3/alpha-5
chain {Arabidopsis thaliana}
Length = 450
Score = 159 bits (386), Expect = 2e-39
Identities = 71/87 (81%), Positives = 77/87 (88%)
Frame = +1
Query: 1 VDLTEFQTNLVPYSRIHFPLVTYAPVISAEKAYHEQLSVAEITNACFEPANQMVKCDPRH 180
VD+TEFQTNLVPY RIHF L +YAPVISA KAYHEQLSV EITNA FEPA+ M KCDPRH
Sbjct: 250 VDITEFQTNLVPYPRIHFMLSSYAPVISAAKAYHEQLSVPEITNAVFEPASMMAKCDPRH 309
Query: 181 GKYMACCMLYRGDVVPKDVNAAIATSK 261
GKYMACC++YRGDVVPKDVNAA+ T K
Sbjct: 310 GKYMACCLMYRGDVVPKDVNAAVGTIK 336
Score = 155 bits (377), Expect = 2e-38
Identities = 66/75 (88%), Positives = 72/75 (96%)
Frame = +3
Query: 255 IKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHK 434
IKTKRT+QFVDWCPTGFK GINYQPPTVVPGGDLAKVQRAVCM+SN TA+AE ++R+DHK
Sbjct: 335 IKTKRTVQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNNTAVAEVFSRIDHK 394
Query: 435 FDLMYAKRAFVHWYV 479
FDLMYAKRAFVHWYV
Sbjct: 395 FDLMYAKRAFVHWYV 409
>At1g64740.1 68414.m07340 tubulin alpha-1 chain (TUA1) nearly
identical to SP|P11139 Tubulin alpha-1 chain
{Arabidopsis thaliana}
Length = 450
Score = 151 bits (367), Expect = 3e-37
Identities = 66/87 (75%), Positives = 74/87 (85%)
Frame = +1
Query: 1 VDLTEFQTNLVPYSRIHFPLVTYAPVISAEKAYHEQLSVAEITNACFEPANQMVKCDPRH 180
VD+TEFQTNLVPY RIHF L +YAPVIS+ KAYHEQ SV EIT + FEP+N M KCDPRH
Sbjct: 250 VDITEFQTNLVPYPRIHFMLSSYAPVISSAKAYHEQFSVPEITTSVFEPSNMMAKCDPRH 309
Query: 181 GKYMACCMLYRGDVVPKDVNAAIATSK 261
GKYMACC++YRGDVVPKDVN A+A K
Sbjct: 310 GKYMACCLMYRGDVVPKDVNTAVAAIK 336
Score = 151 bits (366), Expect = 5e-37
Identities = 64/75 (85%), Positives = 71/75 (94%)
Frame = +3
Query: 255 IKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHK 434
IK KRTIQFVDWCPTGFK GINYQPP+VVPGGDLAKVQRAVCM+SN TA+AE ++R+DHK
Sbjct: 335 IKAKRTIQFVDWCPTGFKCGINYQPPSVVPGGDLAKVQRAVCMISNNTAVAEVFSRIDHK 394
Query: 435 FDLMYAKRAFVHWYV 479
FDLMY+KRAFVHWYV
Sbjct: 395 FDLMYSKRAFVHWYV 409
>At5g62700.1 68418.m07868 tubulin beta-2/beta-3 chain (TUB3) nearly
identical to SP|P29512 Tubulin beta-2/beta-3 chain
{Arabidopsis thaliana}
Length = 450
Score = 70.5 bits (165), Expect = 1e-12
Identities = 34/107 (31%), Positives = 59/107 (55%)
Frame = +1
Query: 4 DLTEFQTNLVPYSRIHFPLVTYAPVISAEKAYHEQLSVAEITNACFEPANQMVKCDPRHG 183
DL + NL+P+ R+HF +V +AP+ S + L+V E+T ++ N M DPRHG
Sbjct: 249 DLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYRSLTVPELTQQMWDSKNMMCAADPRHG 308
Query: 184 KYMACCMLYRGDVVPKDVNAAIATSKPSVLSNSSTGVQPVSRSVSTT 324
+Y+ ++RG + K+V+ + + NSS V+ + +V +T
Sbjct: 309 RYLTASAMFRGKMSTKEVDEQMLNVQN---KNSSYFVEWIPNNVKST 352
Score = 46.4 bits (105), Expect = 2e-05
Identities = 22/74 (29%), Positives = 39/74 (52%)
Frame = +3
Query: 255 IKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHK 434
++ K + FV+W P K + PPT ++ A + N+T+I E + R+ +
Sbjct: 333 VQNKNSSYFVEWIPNNVKSTVCDIPPT--------GLKMASTFIGNSTSIQEMFRRVSEQ 384
Query: 435 FDLMYAKRAFVHWY 476
F M+ ++AF+HWY
Sbjct: 385 FTAMFRRKAFLHWY 398
>At5g62690.1 68418.m07867 tubulin beta-2/beta-3 chain (TUB2) nearly
identical to SP|P29512 Tubulin beta-2/beta-3 chain
{Arabidopsis thaliana}
Length = 450
Score = 70.5 bits (165), Expect = 1e-12
Identities = 34/107 (31%), Positives = 59/107 (55%)
Frame = +1
Query: 4 DLTEFQTNLVPYSRIHFPLVTYAPVISAEKAYHEQLSVAEITNACFEPANQMVKCDPRHG 183
DL + NL+P+ R+HF +V +AP+ S + L+V E+T ++ N M DPRHG
Sbjct: 249 DLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYRSLTVPELTQQMWDSKNMMCAADPRHG 308
Query: 184 KYMACCMLYRGDVVPKDVNAAIATSKPSVLSNSSTGVQPVSRSVSTT 324
+Y+ ++RG + K+V+ + + NSS V+ + +V +T
Sbjct: 309 RYLTASAMFRGKMSTKEVDEQMLNVQN---KNSSYFVEWIPNNVKST 352
Score = 46.4 bits (105), Expect = 2e-05
Identities = 22/74 (29%), Positives = 39/74 (52%)
Frame = +3
Query: 255 IKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHK 434
++ K + FV+W P K + PPT ++ A + N+T+I E + R+ +
Sbjct: 333 VQNKNSSYFVEWIPNNVKSTVCDIPPT--------GLKMASTFIGNSTSIQEMFRRVSEQ 384
Query: 435 FDLMYAKRAFVHWY 476
F M+ ++AF+HWY
Sbjct: 385 FTAMFRRKAFLHWY 398
>At2g29550.1 68415.m03589 tubulin beta-7 chain (TUB7) identical to
GB:M84704 SP|P29515 Tubulin beta-7 chain {Arabidopsis
thaliana}
Length = 449
Score = 70.5 bits (165), Expect = 1e-12
Identities = 34/107 (31%), Positives = 59/107 (55%)
Frame = +1
Query: 4 DLTEFQTNLVPYSRIHFPLVTYAPVISAEKAYHEQLSVAEITNACFEPANQMVKCDPRHG 183
DL + NL+P+ R+HF +V +AP+ S + L+V E+T ++ N M DPRHG
Sbjct: 249 DLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYRNLTVPELTQQMWDAKNMMCAADPRHG 308
Query: 184 KYMACCMLYRGDVVPKDVNAAIATSKPSVLSNSSTGVQPVSRSVSTT 324
+Y+ ++RG + K+V+ + + NSS V+ + +V +T
Sbjct: 309 RYLTASAMFRGKMSTKEVDEQMLNVQN---KNSSYFVEWIPNNVKST 352
Score = 46.4 bits (105), Expect = 2e-05
Identities = 22/74 (29%), Positives = 39/74 (52%)
Frame = +3
Query: 255 IKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHK 434
++ K + FV+W P K + PPT ++ A + N+T+I E + R+ +
Sbjct: 333 VQNKNSSYFVEWIPNNVKSTVCDIPPT--------GLKMASTFIGNSTSIQEMFRRVSEQ 384
Query: 435 FDLMYAKRAFVHWY 476
F M+ ++AF+HWY
Sbjct: 385 FTAMFRRKAFLHWY 398
>At5g23860.1 68418.m02801 tubulin beta-8 chain (TUB8) (TUBB8)
identical to SP|P29516 Tubulin beta-8 chain {Arabidopsis
thaliana}; supporting cDNA gi|15451225|gb|AY054693.1|
Length = 449
Score = 70.1 bits (164), Expect = 1e-12
Identities = 34/107 (31%), Positives = 59/107 (55%)
Frame = +1
Query: 4 DLTEFQTNLVPYSRIHFPLVTYAPVISAEKAYHEQLSVAEITNACFEPANQMVKCDPRHG 183
DL + NL+P+ R+HF +V +AP+ S + L+V E+T ++ N M DPRHG
Sbjct: 249 DLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYRALTVPELTQQMWDAKNMMCAADPRHG 308
Query: 184 KYMACCMLYRGDVVPKDVNAAIATSKPSVLSNSSTGVQPVSRSVSTT 324
+Y+ ++RG + K+V+ + + NSS V+ + +V +T
Sbjct: 309 RYLTASAMFRGKMSTKEVDEQMINVQN---KNSSYFVEWIPNNVKST 352
Score = 46.4 bits (105), Expect = 2e-05
Identities = 22/74 (29%), Positives = 39/74 (52%)
Frame = +3
Query: 255 IKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHK 434
++ K + FV+W P K + PPT ++ A + N+T+I E + R+ +
Sbjct: 333 VQNKNSSYFVEWIPNNVKSTVCDIPPT--------GLKMASTFIGNSTSIQEMFRRVSEQ 384
Query: 435 FDLMYAKRAFVHWY 476
F M+ ++AF+HWY
Sbjct: 385 FTAMFRRKAFLHWY 398
>At5g44340.1 68418.m05429 tubulin beta-4 chain (TUB4) nearly
identical to SP|P24636 Tubulin beta-4 chain {Arabidopsis
thaliana}
Length = 444
Score = 69.3 bits (162), Expect = 2e-12
Identities = 29/79 (36%), Positives = 47/79 (59%)
Frame = +1
Query: 4 DLTEFQTNLVPYSRIHFPLVTYAPVISAEKAYHEQLSVAEITNACFEPANQMVKCDPRHG 183
DL + NL+P+ R+HF +V +AP+ S + LSV E+T ++ N M DPRHG
Sbjct: 249 DLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYSALSVPELTQQMWDAKNMMCAADPRHG 308
Query: 184 KYMACCMLYRGDVVPKDVN 240
+Y+ ++RG + K+V+
Sbjct: 309 RYLTASAVFRGKLSTKEVD 327
Score = 44.8 bits (101), Expect = 6e-05
Identities = 22/74 (29%), Positives = 39/74 (52%)
Frame = +3
Query: 255 IKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHK 434
I+ K + FV+W P K + + P G ++ A + N+T+I E + R+ +
Sbjct: 333 IQNKNSSYFVEWIPNNVKSSVC----DIAPKG----LKMASTFIGNSTSIQEMFRRVSEQ 384
Query: 435 FDLMYAKRAFVHWY 476
F M+ ++AF+HWY
Sbjct: 385 FTAMFRRKAFLHWY 398
>At4g20890.1 68417.m03029 tubulin beta-9 chain (TUB9) nearly
identical to SP|P29517 Tubulin beta-9 chain {Arabidopsis
thaliana}
Length = 444
Score = 69.3 bits (162), Expect = 2e-12
Identities = 29/79 (36%), Positives = 47/79 (59%)
Frame = +1
Query: 4 DLTEFQTNLVPYSRIHFPLVTYAPVISAEKAYHEQLSVAEITNACFEPANQMVKCDPRHG 183
DL + NL+P+ R+HF +V +AP+ S + LSV E+T ++ N M DPRHG
Sbjct: 249 DLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYSALSVPELTQQMWDAKNMMCAADPRHG 308
Query: 184 KYMACCMLYRGDVVPKDVN 240
+Y+ ++RG + K+V+
Sbjct: 309 RYLTASAVFRGKMSTKEVD 327
Score = 44.4 bits (100), Expect = 8e-05
Identities = 21/74 (28%), Positives = 39/74 (52%)
Frame = +3
Query: 255 IKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHK 434
++ K + FV+W P K + + P G ++ A + N+T+I E + R+ +
Sbjct: 333 VQNKNSSYFVEWIPNNVKSSVC----DIAPTG----LKMASTFIGNSTSIQEMFRRVSEQ 384
Query: 435 FDLMYAKRAFVHWY 476
F M+ ++AF+HWY
Sbjct: 385 FTAMFRRKAFLHWY 398
>At1g20010.1 68414.m02506 tubulin beta-5 chain (TUB5) nearly
identical to SP|P29513 Tubulin beta-5 chain {Arabidopsis
thaliana}
Length = 449
Score = 69.3 bits (162), Expect = 2e-12
Identities = 34/107 (31%), Positives = 59/107 (55%)
Frame = +1
Query: 4 DLTEFQTNLVPYSRIHFPLVTYAPVISAEKAYHEQLSVAEITNACFEPANQMVKCDPRHG 183
DL + NL+P+ R+HF +V +AP+ S + L+V E+T ++ N M DPRHG
Sbjct: 250 DLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYISLTVPELTQQMWDSKNMMCAADPRHG 309
Query: 184 KYMACCMLYRGDVVPKDVNAAIATSKPSVLSNSSTGVQPVSRSVSTT 324
+Y+ ++RG + K+V+ I + NSS V+ + +V ++
Sbjct: 310 RYLTASAIFRGQMSTKEVDEQILNIQN---KNSSYFVEWIPNNVKSS 353
Score = 45.6 bits (103), Expect = 3e-05
Identities = 22/74 (29%), Positives = 38/74 (51%)
Frame = +3
Query: 255 IKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHK 434
I+ K + FV+W P K + PP ++ A + N+T+I E + R+ +
Sbjct: 334 IQNKNSSYFVEWIPNNVKSSVCDIPPK--------GLKMAATFVGNSTSIQEMFRRVSEQ 385
Query: 435 FDLMYAKRAFVHWY 476
F M+ ++AF+HWY
Sbjct: 386 FTAMFRRKAFLHWY 399
>At1g75780.1 68414.m08801 tubulin beta-1 chain (TUB1) nearly
identical to SP|P12411 Tubulin beta-1 chain {Arabidopsis
thaliana}
Length = 447
Score = 68.9 bits (161), Expect = 3e-12
Identities = 34/107 (31%), Positives = 59/107 (55%)
Frame = +1
Query: 4 DLTEFQTNLVPYSRIHFPLVTYAPVISAEKAYHEQLSVAEITNACFEPANQMVKCDPRHG 183
DL + NL+P+ R+HF +V +AP+ S + L+V E+T ++ N M DPRHG
Sbjct: 250 DLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYISLTVPELTQQMWDAKNMMCAADPRHG 309
Query: 184 KYMACCMLYRGDVVPKDVNAAIATSKPSVLSNSSTGVQPVSRSVSTT 324
+Y+ ++RG + K+V+ I + NSS V+ + +V ++
Sbjct: 310 RYLTASAMFRGKMSTKEVDEQILNVQN---KNSSYFVEWIPNNVKSS 353
Score = 47.6 bits (108), Expect = 8e-06
Identities = 22/74 (29%), Positives = 39/74 (52%)
Frame = +3
Query: 255 IKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHK 434
++ K + FV+W P K + PPT ++ A + N+T+I E + R+ +
Sbjct: 334 VQNKNSSYFVEWIPNNVKSSVCDIPPT--------GIKMASTFVGNSTSIQEMFRRVSEQ 385
Query: 435 FDLMYAKRAFVHWY 476
F M+ ++AF+HWY
Sbjct: 386 FTAMFRRKAFLHWY 399
>At5g12250.1 68418.m01439 tubulin beta-6 chain (TUB6) nearly
identical to SP|P29514 Tubulin beta-6 chain {Arabidopsis
thaliana}
Length = 449
Score = 68.5 bits (160), Expect = 4e-12
Identities = 28/79 (35%), Positives = 47/79 (59%)
Frame = +1
Query: 4 DLTEFQTNLVPYSRIHFPLVTYAPVISAEKAYHEQLSVAEITNACFEPANQMVKCDPRHG 183
DL + NL+P+ R+HF +V +AP+ S + L+V E+T ++ N M DPRHG
Sbjct: 249 DLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYRALTVPELTQQMWDSKNMMCAADPRHG 308
Query: 184 KYMACCMLYRGDVVPKDVN 240
+Y+ ++RG + K+V+
Sbjct: 309 RYLTASAMFRGKMSTKEVD 327
Score = 44.0 bits (99), Expect = 1e-04
Identities = 21/74 (28%), Positives = 38/74 (51%)
Frame = +3
Query: 255 IKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHK 434
++ K + FV+W P K + + P G + A + N+T+I E + R+ +
Sbjct: 333 VQNKNSSYFVEWIPNNVKSSVC----DIAPRG----LSMASTFIGNSTSIQEMFRRVSEQ 384
Query: 435 FDLMYAKRAFVHWY 476
F M+ ++AF+HWY
Sbjct: 385 FTAMFRRKAFLHWY 398
>At5g05620.1 68418.m00612 tubulin gamma-2 chain / gamma-2 tubulin
(TUBG2) identical to SP|P38558 Tubulin gamma-2 chain
(Gamma-2 tubulin) {Arabidopsis thaliana}
Length = 474
Score = 34.3 bits (75), Expect = 0.082
Identities = 18/74 (24%), Positives = 40/74 (54%)
Frame = +3
Query: 255 IKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHK 434
I+ ++ + F+DW P +V ++ + P V ++ + ML++ T+I ++R +
Sbjct: 342 IRERKLVNFIDWGPASIQVALSKKSPYVQTSHRVSGL-----MLASHTSIRHLFSRCLSQ 396
Query: 435 FDLMYAKRAFVHWY 476
+D + K+AF+ Y
Sbjct: 397 YDKLRKKQAFLDNY 410
Score = 32.3 bits (70), Expect = 0.33
Identities = 22/98 (22%), Positives = 43/98 (43%), Gaps = 6/98 (6%)
Frame = +1
Query: 4 DLTEFQTNLVPYSRIHFPLVTYAPV-ISAEKAYHEQLSVAEITNACFEPANQMVKCDPRH 180
DL +L+P R HF + Y P+ + + + +V ++ + N MV R+
Sbjct: 252 DLVGLLASLIPTPRCHFLMTGYTPLTVERQANVIRKTTVLDVMRRLLQTKNIMVSSYARN 311
Query: 181 -----GKYMACCMLYRGDVVPKDVNAAIATSKPSVLSN 279
KY++ + +G+V P V+ ++ + L N
Sbjct: 312 KEASQAKYISILNIIQGEVDPTQVHESLQRIRERKLVN 349
>At3g62210.1 68416.m06989 expressed protein contains Pfam profile
PF04396: Protein of unknown function, DUF537; expression
supported by MPSS
Length = 279
Score = 32.7 bits (71), Expect = 0.25
Identities = 14/37 (37%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
Frame = -1
Query: 246 GRVHILGY-DVTTVQHTASHVLAMTGVAFHHLVGGLE 139
GRV I Y D + + H H L TG+ HH+ G++
Sbjct: 59 GRVSISAYGDTSGIPHVIQHALNSTGIELHHVPAGVK 95
>At3g61650.1 68416.m06909 tubulin gamma-1 chain / gamma-1 tubulin
(TUBG1) identical to SP|P38557 Tubulin gamma-1 chain
(Gamma-1 tubulin) {Arabidopsis thaliana}
Length = 474
Score = 32.7 bits (71), Expect = 0.25
Identities = 27/122 (22%), Positives = 51/122 (41%), Gaps = 6/122 (4%)
Frame = +1
Query: 4 DLTEFQTNLVPYSRIHFPLVTYAPV-ISAEKAYHEQLSVAEITNACFEPANQMVKCDPRH 180
DL +L+P R HF + Y P+ + + + +V ++ + N MV R+
Sbjct: 252 DLVGLLASLIPTPRCHFLMTGYTPLTVERQANVIRKTTVLDVMRRLLQTKNIMVSSYARN 311
Query: 181 -----GKYMACCMLYRGDVVPKDVNAAIATSKPSVLSNSSTGVQPVSRSVSTTSHPPWCP 345
KY++ + +G+V P V+ ++ + L N P S V+ + P+
Sbjct: 312 KEASQAKYISILNIIQGEVDPTQVHESLQRIRERKLVNFIEW-GPASIQVALSKKSPYVQ 370
Query: 346 EA 351
A
Sbjct: 371 TA 372
>At2g28510.1 68415.m03464 Dof-type zinc finger domain-containing
protein similar to elicitor-responsive Dof protein ERDP
GI:6092016 from [Pisum sativum]
Length = 288
Score = 28.3 bits (60), Expect = 5.4
Identities = 26/91 (28%), Positives = 41/91 (45%), Gaps = 1/91 (1%)
Frame = -2
Query: 602 FGSLNRSPSAEFHADFLRNP-SRGQPGSSRGFEELSLLHTLTDVPVHESTLGVHEVELVV 426
F N + S FH D L+NP G P SS G++ H++ D+ + +TL H +
Sbjct: 108 FSKNNNNKSINFHTDPLQNPLITGMPPSSFGYD-----HSI-DLNLAFATLQKHHLSSQA 161
Query: 425 KASPSFXXXXXXXXXXXGTLNLGQVASGHHG 333
+PSF T ++G + G +G
Sbjct: 162 -TTPSFGFGGDLSIYGNSTNDVG-IFGGQNG 190
>At1g62870.1 68414.m07099 expressed protein
Length = 796
Score = 28.3 bits (60), Expect = 5.4
Identities = 18/46 (39%), Positives = 20/46 (43%), Gaps = 2/46 (4%)
Frame = +2
Query: 20 RLTWCLTPVSTSHWSRTRQSSLPRR--PTMNSFPSPRSQTHASSPP 151
R + C S S+ SRT L R P NS P P S S PP
Sbjct: 80 RCSLCDAVFSASNPSRTASEHLKRGTCPNFNSLPKPISTISPSPPP 125
>At1g56130.1 68414.m06445 leucine-rich repeat family protein /
protein kinase family protein contains Pfam domains
PF00560: Leucine Rich Repeat and PF00069: Protein kinase
domain
Length = 1032
Score = 28.3 bits (60), Expect = 5.4
Identities = 23/75 (30%), Positives = 34/75 (45%), Gaps = 1/75 (1%)
Frame = -3
Query: 514 ASKNSPSSIPSPTYQCTKARLAYMRSNLWSRRAQAS-AMAVVLDNMQTAR*TLAKSPPGT 338
+S N SIP +CTK + Y+ S+ S R S A V L+ A + P
Sbjct: 179 SSNNFSGSIPDEIGRCTKLQQMYIDSSGLSGRIPLSFANLVQLEQAWIADLEVTDQIP-D 237
Query: 337 TVGGW*LIPTLKPVG 293
+G W + TL+ +G
Sbjct: 238 FIGDWTKLTTLRIIG 252
>At3g21540.1 68416.m02717 transducin family protein / WD-40 repeat
family protein contains Pfam profile: PF00400 WD domain,
G-beta repeat (10 copies); similar to WD-repeat protein
3 (SP:Q9UNX4) [Homo sapiens]
Length = 955
Score = 27.9 bits (59), Expect = 7.1
Identities = 16/45 (35%), Positives = 22/45 (48%)
Frame = -2
Query: 356 QVASGHHGGWLVVDTDLETGWTPVDELDSTLGFDVAMAAFTSLGT 222
Q+ SGHH VDTD E + D L F A+ ++S G+
Sbjct: 184 QIVSGHHSEVWSVDTDPEERYVVTGSADQELRF-YAVKEYSSNGS 227
>At1g64080.1 68414.m07259 expressed protein identical to
hypothetical protein GB:AAF24565 GI:6692100 from
[Arabidopsis thaliana]
Length = 411
Score = 27.9 bits (59), Expect = 7.1
Identities = 17/55 (30%), Positives = 29/55 (52%)
Frame = +1
Query: 412 LGLALTTSSTSCTPSVLSCTGTSVRVWRRESSSKPREEPGCPREGLRRKSAWNSA 576
LG + ++SST+ TPS + T T+ RR S +++ L K ++NS+
Sbjct: 337 LGKSRSSSSTATTPSSTTATVTTQSESRRRDDSLLQQQDSIQSAILHCKRSFNSS 391
>At3g11690.1 68416.m01433 expressed protein
Length = 252
Score = 27.5 bits (58), Expect = 9.4
Identities = 20/60 (33%), Positives = 28/60 (46%)
Frame = +2
Query: 38 TPVSTSHWSRTRQSSLPRRPTMNSFPSPRSQTHASSPPTRW*NATPVMASTWLAVCCTVV 217
TP S+ S RQ L R +++S PSPR+ S+P T A+ W C +V
Sbjct: 21 TPSSSPSRSNRRQPLLQR--SLSS-PSPRASCGGSTPAEFCGGTTASCAAVWCCCPCGLV 77
>At1g21090.1 68414.m02638 hydroxyproline-rich glycoprotein family
protein
Length = 242
Score = 27.5 bits (58), Expect = 9.4
Identities = 18/62 (29%), Positives = 31/62 (50%), Gaps = 1/62 (1%)
Frame = +2
Query: 5 TSPSSR-LTWCLTPVSTSHWSRTRQSSLPRRPTMNSFPSPRSQTHASSPPTRW*NATPVM 181
T P+S TW + + ++S T +SLP+ +N + + A+SPP++ PV
Sbjct: 82 TKPNSTSFTWYPSRTGSYYFSFTNNTSLPKTCQLNQKLTVQVILAAASPPSQPPATAPVP 141
Query: 182 AS 187
S
Sbjct: 142 VS 143
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,818,677
Number of Sequences: 28952
Number of extensions: 401717
Number of successful extensions: 1322
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 1216
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1313
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1555552968
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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