Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30672
         (486 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC36.03c |||spermidine family transporter |Schizosaccharomyces...    27   2.0  
SPBC947.05c |||ferric-chelate reductase |Schizosaccharomyces pom...    26   3.5  
SPAC29A4.19c |||P-type ATPase |Schizosaccharomyces pombe|chr 1||...    26   3.5  
SPBC16H5.09c |||alpha-1,2-mannosyltransferase |Schizosaccharomyc...    25   6.1  
SPAC3H1.02c |||metallopeptidase|Schizosaccharomyces pombe|chr 1|...    25   8.0  

>SPBC36.03c |||spermidine family transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 538

 Score = 26.6 bits (56), Expect = 2.0
 Identities = 10/33 (30%), Positives = 21/33 (63%)
 Frame = -1

Query: 207 FFTHRIWLLPIIYVQSSYCRLVTFAVQASIWLI 109
           ++TH  W++P +    + C ++T  +Q+ I+LI
Sbjct: 430 YYTHVHWIVPTLSGLLTGCGILTIFMQSLIYLI 462


>SPBC947.05c |||ferric-chelate reductase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 564

 Score = 25.8 bits (54), Expect = 3.5
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = -1

Query: 153 CRLVTFAVQASIWLICNLHTKNIRIKTVNAYT 58
           CR ++    AS  L   LH  N+R+K +N +T
Sbjct: 452 CRSLSLLKVASKSLNSLLHQSNVRLKIINHFT 483


>SPAC29A4.19c |||P-type ATPase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1096

 Score = 25.8 bits (54), Expect = 3.5
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = +3

Query: 339 FQASKCIIILTD*YIFYYCILEWSSKFVCF 428
           FQA   +I L D ++FY C + + S +  F
Sbjct: 206 FQAVSVLIWLCDSFVFYSCCIVFISSYSIF 235


>SPBC16H5.09c |||alpha-1,2-mannosyltransferase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 372

 Score = 25.0 bits (52), Expect = 6.1
 Identities = 10/20 (50%), Positives = 15/20 (75%)
 Frame = +1

Query: 427 LNVY*VKFVLNYFGDKLMGG 486
           LNVY ++  LNY+ D+L+ G
Sbjct: 35  LNVYKLEERLNYYNDRLLDG 54


>SPAC3H1.02c |||metallopeptidase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1036

 Score = 24.6 bits (51), Expect = 8.0
 Identities = 16/47 (34%), Positives = 25/47 (53%)
 Frame = +1

Query: 337 PFKRRNALSF*LIDTYFIIVFWNGLQSLYVLNVY*VKFVLNYFGDKL 477
           PF++R+A  F ++ +YF I  +N     Y LN    + +L    DKL
Sbjct: 686 PFQKRDA-EF-ILPSYFDIRLYNDCSLKYSLNTLSQEKILRELRDKL 730


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,853,532
Number of Sequences: 5004
Number of extensions: 33466
Number of successful extensions: 50
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 49
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 50
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 188065158
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)