Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30672
         (486 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_14689| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   1.5  
SB_13140| Best HMM Match : 7tm_1 (HMM E-Value=2.5e-15)                 27   8.2  
SB_3110| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   8.2  

>SB_14689| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1900

 Score = 29.5 bits (63), Expect = 1.5
 Identities = 15/48 (31%), Positives = 29/48 (60%), Gaps = 3/48 (6%)
 Frame = -1

Query: 189 WLLPIIYVQS--SYCRLVTFAVQASIWLI-CNLHTKNIRIKTVNAYTQ 55
           W+  I+Y+Q   SY + V    +  + LI C ++++ I  KT++AY++
Sbjct: 337 WISLILYIQRLPSYGKYVIMLYRMFVTLIKCGIYSRRIYQKTIDAYSR 384


>SB_13140| Best HMM Match : 7tm_1 (HMM E-Value=2.5e-15)
          Length = 987

 Score = 27.1 bits (57), Expect = 8.2
 Identities = 10/29 (34%), Positives = 16/29 (55%)
 Frame = -1

Query: 144 VTFAVQASIWLICNLHTKNIRIKTVNAYT 58
           V F VQ  +W     H K +++ T+ +YT
Sbjct: 611 VLFLVQIQVWSSLRRHRKKLKLMTLPSYT 639


>SB_3110| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 458

 Score = 27.1 bits (57), Expect = 8.2
 Identities = 9/35 (25%), Positives = 19/35 (54%)
 Frame = +3

Query: 357 IIILTD*YIFYYCILEWSSKFVCFECILSEICVKL 461
           + I+   + +++  L W S+F   E ++ +IC  L
Sbjct: 85  LFIIDRDFAYFFLTLWWCSRFALIEFLIEQICCSL 119


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,116,974
Number of Sequences: 59808
Number of extensions: 227912
Number of successful extensions: 419
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 378
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 419
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1026164244
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)