Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30671
         (535 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF592538-1|ABQ95984.1|  582|Tribolium castaneum beta-N-acetylglu...    22   3.0  
AM292371-1|CAL23183.2|  350|Tribolium castaneum gustatory recept...    22   3.9  

>EF592538-1|ABQ95984.1|  582|Tribolium castaneum
           beta-N-acetylglucosaminidase NAG3 protein.
          Length = 582

 Score = 22.2 bits (45), Expect = 3.0
 Identities = 6/21 (28%), Positives = 10/21 (47%)
 Frame = -1

Query: 520 WTHSRDTRKSLLNWFWGRYVN 458
           W  ++   K  +  FW +Y N
Sbjct: 378 WQDTKSANKIAMKLFWAQYTN 398



 Score = 20.6 bits (41), Expect = 9.0
 Identities = 5/8 (62%), Positives = 7/8 (87%)
 Frame = +2

Query: 137 CGYGLWRP 160
           CG+G W+P
Sbjct: 467 CGFGPWKP 474


>AM292371-1|CAL23183.2|  350|Tribolium castaneum gustatory receptor
           candidate 50 protein.
          Length = 350

 Score = 21.8 bits (44), Expect = 3.9
 Identities = 8/12 (66%), Positives = 10/12 (83%)
 Frame = +3

Query: 39  LIGY*INYHRVS 74
           L+GY INY R+S
Sbjct: 112 LLGYSINYRRIS 123


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 106,361
Number of Sequences: 336
Number of extensions: 1661
Number of successful extensions: 3
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 122,585
effective HSP length: 53
effective length of database: 104,777
effective search space used: 12992348
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)