Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30671
         (535 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4A8.08c |vas1||mitochondrial valine-tRNA ligase Vas1|Schizos...    26   4.1  
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual    26   4.1  
SPCC777.07 |||alpha-1,2-mannosyltransferase |Schizosaccharomyces...    25   7.1  
SPBC16D10.08c |||heat shock protein Hsp104 |Schizosaccharomyces ...    25   9.4  
SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31 |Schizo...    25   9.4  
SPAC4D7.07c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    25   9.4  

>SPAC4A8.08c |vas1||mitochondrial valine-tRNA ligase
           Vas1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 950

 Score = 25.8 bits (54), Expect = 4.1
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = +2

Query: 437 LVQKHIYVHVPPPEPVEQRLPRIPAVGPPP 526
           +++KHI  H P P+ +E   P  P + PPP
Sbjct: 42  IIRKHI--HYPKPKSIEA--PMFPILLPPP 67


>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1236

 Score = 25.8 bits (54), Expect = 4.1
 Identities = 27/99 (27%), Positives = 42/99 (42%)
 Frame = -1

Query: 421  STRISATESSITSEAQTAAAAKGESTTETESIRRVSAAKGNAASRKAT*GSRMTTKATVX 242
            ST  SAT SS +S A  + +    S+  T S    S +   AAS   +  S + T A+V 
Sbjct: 965  STAASATGSSTSSIATASVSGSSTSSVATASATDSSTSSIAAASVTGSSTSSVAT-ASVT 1023

Query: 241  XXXXXXXXXXXXXXPSGSGVAVSHWRFRAP*AIATQAST 125
                           S S +AV+     +  ++AT ++T
Sbjct: 1024 DSSTSSVATASATDSSTSSIAVASVTGSSTSSVATASAT 1062


>SPCC777.07 |||alpha-1,2-mannosyltransferase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 378

 Score = 25.0 bits (52), Expect = 7.1
 Identities = 14/33 (42%), Positives = 15/33 (45%), Gaps = 1/33 (3%)
 Frame = +2

Query: 119 FRGTRLCGYGL-WRPEPPVGYSYSAPRGSLRKL 214
           +R   L  Y   WR EP V YS   P    RKL
Sbjct: 176 YRNKALSHYDYYWRVEPGVEYSCDIPYDPFRKL 208


>SPBC16D10.08c |||heat shock protein Hsp104 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 905

 Score = 24.6 bits (51), Expect = 9.4
 Identities = 10/16 (62%), Positives = 11/16 (68%)
 Frame = +2

Query: 482 VEQRLPRIPAVGPPPE 529
           V  RL R+PA  PPPE
Sbjct: 68  VTSRLVRLPAQDPPPE 83


>SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31
            |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1224

 Score = 24.6 bits (51), Expect = 9.4
 Identities = 10/21 (47%), Positives = 11/21 (52%)
 Frame = +2

Query: 464  VPPPEPVEQRLPRIPAVGPPP 526
            +P P PV   LP   AV  PP
Sbjct: 1071 IPQPPPVSTALPSSSAVSRPP 1091


>SPAC4D7.07c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 600

 Score = 24.6 bits (51), Expect = 9.4
 Identities = 9/32 (28%), Positives = 15/32 (46%)
 Frame = -1

Query: 526 WGWTHSRDTRKSLLNWFWGRYVNIDVFLYKRS 431
           +GWT  +     +L  +WG+  N+   L   S
Sbjct: 435 YGWTFPKPKFSDILRDYWGKKANLPTALLDTS 466


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,822,133
Number of Sequences: 5004
Number of extensions: 29628
Number of successful extensions: 122
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 110
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 120
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 220420454
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)