Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30671
(535 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_02_0229 - 14540302-14540736 31 0.58
06_03_1365 + 29598130-29598523,29599016-29599078,29599292-29599398 31 0.58
03_06_0316 + 33091194-33091370,33091451-33092155 29 1.8
02_01_0708 - 5298456-5298664,5299615-5299768,5300209-5300301,530... 29 1.8
01_03_0008 + 11594061-11594078,11594201-11594285,11594506-11595149 29 1.8
01_01_0892 + 7037384-7037795,7038447-7038962,7039507-7039593,703... 26 2.2
12_02_0827 + 23492583-23492633,23493018-23493566,23493722-23494012 29 2.4
08_02_0839 + 21693348-21694853 29 2.4
07_03_1090 + 23891294-23892222,23892317-23892516,23895241-238954... 29 2.4
04_04_0063 - 22441549-22442961 29 3.1
11_04_0460 - 17955102-17955146,17955253-17955310,17955442-179555... 28 5.4
09_03_0003 + 11396076-11396386,11398803-11398869,11399194-113996... 28 5.4
09_02_0585 - 10939328-10939724,10940242-10940431,10940722-109407... 28 5.4
04_04_1107 - 30954647-30954769,30955052-30955141,30955309-309556... 28 5.4
02_02_0471 - 10714440-10714846,10714947-10715034,10715427-107155... 28 5.4
09_02_0590 - 10978335-10978728,10978855-10979044,10979130-109791... 27 7.2
07_01_0725 - 5532803-5533324,5533631-5533657,5534285-5534398,553... 27 7.2
02_04_0443 - 22969690-22969700,22970561-22970642,22971484-229716... 27 7.2
01_07_0074 - 40894916-40895754,40896322-40896691,40897239-408972... 27 7.2
12_02_0370 + 18139557-18140469,18140561-18140704,18140804-181409... 27 9.5
09_03_0023 + 11617562-11617692,11617773-11617844,11620438-116205... 27 9.5
09_02_0625 + 11334418-11334499,11335067-11335164,11335758-113358... 27 9.5
04_01_0148 + 1710369-1710531,1711821-1712279,1712769-1712915,171... 27 9.5
03_06_0621 - 35147070-35148359,35148499-35148579,35148665-351487... 27 9.5
02_05_0686 - 30900748-30902167,30903442-30904742 27 9.5
>08_02_0229 - 14540302-14540736
Length = 144
Score = 31.1 bits (67), Expect = 0.58
Identities = 19/50 (38%), Positives = 27/50 (54%)
Frame = -3
Query: 368 CRRKGRVHHRDRVHQKSVRRKGKCCLQKGHLGIQNDHQSNSSVSAADRGR 219
CRR+G R Q++ RR+G C G G ++N++V AAD GR
Sbjct: 71 CRRRGGTSGGLRGKQRAGRRRGGGCDAGGGDGTAG-RRANAAVGAADDGR 119
>06_03_1365 + 29598130-29598523,29599016-29599078,29599292-29599398
Length = 187
Score = 31.1 bits (67), Expect = 0.58
Identities = 21/48 (43%), Positives = 26/48 (54%)
Frame = -1
Query: 424 VSTRISATESSITSEAQTAAAAKGESTTETESIRRVSAAKGNAASRKA 281
V+T SA S +S A AAAA G T + + SA+ GNAAS A
Sbjct: 109 VTTDASACAKSASSSATAAAAAAGAGTAGSTAAS--SASTGNAASTAA 154
>03_06_0316 + 33091194-33091370,33091451-33092155
Length = 293
Score = 29.5 bits (63), Expect = 1.8
Identities = 16/48 (33%), Positives = 26/48 (54%)
Frame = -1
Query: 424 VSTRISATESSITSEAQTAAAAKGESTTETESIRRVSAAKGNAASRKA 281
++T ++ATE + +E AAA + +T + + AK AA RKA
Sbjct: 1 MATDVAATEPEVAAEEAAAAAPETTATAGDSKPAKEAKAKKAAAPRKA 48
>02_01_0708 -
5298456-5298664,5299615-5299768,5300209-5300301,
5300644-5300847,5302034-5302174,5302723-5302827,
5303485-5303874,5304573-5304713,5304756-5304845,
5305779-5306288
Length = 678
Score = 29.5 bits (63), Expect = 1.8
Identities = 11/20 (55%), Positives = 12/20 (60%)
Frame = +2
Query: 467 PPPEPVEQRLPRIPAVGPPP 526
PPPEP Q LP + A P P
Sbjct: 8 PPPEPQPQTLPAVAAASPSP 27
>01_03_0008 + 11594061-11594078,11594201-11594285,11594506-11595149
Length = 248
Score = 29.5 bits (63), Expect = 1.8
Identities = 13/32 (40%), Positives = 14/32 (43%)
Frame = +2
Query: 434 PLVQKHIYVHVPPPEPVEQRLPRIPAVGPPPE 529
P + H PPP P E PA PPPE
Sbjct: 70 PTIFSHTDPAAPPPPPAEGEAAPPPADAPPPE 101
>01_01_0892 +
7037384-7037795,7038447-7038962,7039507-7039593,
7039698-7039768,7040148-7040224,7040380-7040527,
7040973-7041134,7041374-7041694
Length = 597
Score = 25.8 bits (54), Expect(2) = 2.2
Identities = 9/20 (45%), Positives = 14/20 (70%)
Frame = +2
Query: 467 PPPEPVEQRLPRIPAVGPPP 526
PPP+ V +++P P+ PPP
Sbjct: 155 PPPDHVLKKVPSHPSPPPPP 174
Score = 21.8 bits (44), Expect(2) = 2.2
Identities = 7/11 (63%), Positives = 7/11 (63%)
Frame = +2
Query: 449 HIYVHVPPPEP 481
H Y H PPP P
Sbjct: 121 HYYGHPPPPPP 131
>12_02_0827 + 23492583-23492633,23493018-23493566,23493722-23494012
Length = 296
Score = 29.1 bits (62), Expect = 2.4
Identities = 19/53 (35%), Positives = 26/53 (49%)
Frame = -1
Query: 439 KRSTRVSTRISATESSITSEAQTAAAAKGESTTETESIRRVSAAKGNAASRKA 281
KRST+ S+ S+ + A AAA STT T + S+A AA+ A
Sbjct: 148 KRSTKKSSSSSSRQGGGAGNA-AAAATSSSSTTSTSTTATTSSAAAPAAAAAA 199
>08_02_0839 + 21693348-21694853
Length = 501
Score = 29.1 bits (62), Expect = 2.4
Identities = 12/28 (42%), Positives = 17/28 (60%), Gaps = 1/28 (3%)
Frame = +2
Query: 449 HI-YVHVPPPEPVEQRLPRIPAVGPPPE 529
HI Y +PP P++ LP +P PPP+
Sbjct: 9 HINYTALPPTSPLQLPLPYLPPPPPPPQ 36
>07_03_1090 +
23891294-23892222,23892317-23892516,23895241-23895482,
23895771-23896461,23896486-23896562
Length = 712
Score = 29.1 bits (62), Expect = 2.4
Identities = 13/21 (61%), Positives = 14/21 (66%), Gaps = 1/21 (4%)
Frame = +2
Query: 467 PPPEPVEQRLPR-IPAVGPPP 526
PPP P QRL R +PA PPP
Sbjct: 226 PPPPPPRQRLLRPLPAESPPP 246
>04_04_0063 - 22441549-22442961
Length = 470
Score = 28.7 bits (61), Expect = 3.1
Identities = 20/60 (33%), Positives = 31/60 (51%), Gaps = 2/60 (3%)
Frame = -1
Query: 421 STRISATESSITSEAQTAAAAKGESTTETESIRRVSAAKG--NAASRKAT*GSRMTTKAT 248
+T +AT S + A+TA+ A S+R VS+AKG AAS + T + T ++
Sbjct: 310 TTTTTATACSTPASARTASVADYGFDQHLPSVRLVSSAKGTPEAASHRWTAADKSRTPSS 369
>11_04_0460 - 17955102-17955146,17955253-17955310,17955442-17955593,
17955888-17955993,17956101-17956222,17956766-17956834,
17956969-17957214,17957331-17957373,17957449-17957520,
17957954-17958066,17958158-17958238,17958343-17958415,
17959413-17959519,17960410-17960514,17960684-17960974,
17961621-17961707,17961774-17961842,17961917-17961973,
17962057-17962155,17962223-17962312,17962395-17962511,
17964164-17964244,17964353-17964502,17964812-17964956,
17967359-17967510,17967647-17967784,17967838-17967914,
17968032-17968134
Length = 1015
Score = 27.9 bits (59), Expect = 5.4
Identities = 10/32 (31%), Positives = 23/32 (71%), Gaps = 1/32 (3%)
Frame = -3
Query: 527 LGVDPQQGYEEVFAQLVLGEVRE-HRCVSVQE 435
LG+D ++G++E+ + L ++RE +C+ +Q+
Sbjct: 958 LGIDEEEGFQEIEMRQWLQDIREIGKCIKLQQ 989
>09_03_0003 +
11396076-11396386,11398803-11398869,11399194-11399698,
11400903-11401038,11401186-11401257,11401891-11401923,
11401924-11402047,11402387-11402437,11403437-11403563,
11404230-11404298,11404369-11404486,11404755-11405151
Length = 669
Score = 27.9 bits (59), Expect = 5.4
Identities = 15/55 (27%), Positives = 23/55 (41%)
Frame = -3
Query: 296 CLQKGHLGIQNDHQSNSSVSAADRGRAEAS*VTLWERSSCIPLEVQGAIGHSHTG 132
C K HL + ++ N S+ RG+ W + I LE + + HTG
Sbjct: 452 CSNKNHLALIYEYMPNGSLYDHIRGKNAIVQTLGWHDRARIALEAAQGLDYLHTG 506
>09_02_0585 -
10939328-10939724,10940242-10940431,10940722-10940790,
10941080-10941206,10941401-10941696,10941791-10941954,
10942453-10942601
Length = 463
Score = 27.9 bits (59), Expect = 5.4
Identities = 15/68 (22%), Positives = 29/68 (42%)
Frame = -3
Query: 335 RVHQKSVRRKGKCCLQKGHLGIQNDHQSNSSVSAADRGRAEAS*VTLWERSSCIPLEVQG 156
+VH +++ C +KGHL + ++ + S+ RG S W + +E
Sbjct: 209 KVHHRNLVSLVGYCWEKGHLALVYEYMARGSLCDHLRGNNGVSDSLNWRTRVRVVVEAAQ 268
Query: 155 AIGHSHTG 132
+ + H G
Sbjct: 269 GLDYLHKG 276
>04_04_1107 -
30954647-30954769,30955052-30955141,30955309-30955617,
30955732-30955842,30955945-30956379,30956452-30956610,
30957044-30957994,30959016-30959483
Length = 881
Score = 27.9 bits (59), Expect = 5.4
Identities = 11/21 (52%), Positives = 13/21 (61%)
Frame = +2
Query: 464 VPPPEPVEQRLPRIPAVGPPP 526
+PPP P +R IP GPPP
Sbjct: 48 MPPPPPRPRRALPIPGRGPPP 68
>02_02_0471 -
10714440-10714846,10714947-10715034,10715427-10715516,
10715614-10715727
Length = 232
Score = 27.9 bits (59), Expect = 5.4
Identities = 16/49 (32%), Positives = 23/49 (46%)
Frame = -1
Query: 427 RVSTRISATESSITSEAQTAAAAKGESTTETESIRRVSAAKGNAASRKA 281
+VST + A E I + TAAAA+ E E + + A G +A
Sbjct: 127 KVSTLLPADEEEIKPKEATAAAAEEEKKEEAAAAAAATDAAGEEKKEEA 175
>09_02_0590 -
10978335-10978728,10978855-10979044,10979130-10979198,
10980061-10980187,10980562-10980824,10980928-10981076,
10981186-10981260,10983391-10983462,10983554-10983692,
10983796-10984265,10985278-10985854,10986997-10987063
Length = 863
Score = 27.5 bits (58), Expect = 7.2
Identities = 14/68 (20%), Positives = 30/68 (44%)
Frame = -3
Query: 335 RVHQKSVRRKGKCCLQKGHLGIQNDHQSNSSVSAADRGRAEAS*VTLWERSSCIPLEVQG 156
+VH +++ C +K HL + ++ S ++ RG+ + W+ + LE
Sbjct: 610 KVHHRNLVCLVGYCWEKEHLALVYEYMSRGNLCDYLRGKTGMGEILNWKTRVRVALEAAQ 669
Query: 155 AIGHSHTG 132
+ + H G
Sbjct: 670 GLDYLHKG 677
>07_01_0725 -
5532803-5533324,5533631-5533657,5534285-5534398,
5534564-5534731,5535951-5536193,5537178-5537261,
5537357-5538117,5539637-5539730,5540633-5540899,
5541311-5541316,5542538-5542657
Length = 801
Score = 27.5 bits (58), Expect = 7.2
Identities = 12/29 (41%), Positives = 15/29 (51%)
Frame = +2
Query: 83 DQSRFVQAQNARFRGTRLCGYGLWRPEPP 169
D+ F+ +RG R G GLW P PP
Sbjct: 110 DKQEFIDIVETVYRGARK-GRGLWAPLPP 137
>02_04_0443 -
22969690-22969700,22970561-22970642,22971484-22971601,
22973513-22973740,22973948-22974231
Length = 240
Score = 27.5 bits (58), Expect = 7.2
Identities = 9/21 (42%), Positives = 13/21 (61%)
Frame = +2
Query: 467 PPPEPVEQRLPRIPAVGPPPE 529
P P P++ LPR+ PPP+
Sbjct: 37 PAPPPMDLALPRLDPASPPPD 57
>01_07_0074 -
40894916-40895754,40896322-40896691,40897239-40897291,
40897456-40897593,40897646-40897716,40898655-40898900,
40899205-40899386,40899494-40899697
Length = 700
Score = 27.5 bits (58), Expect = 7.2
Identities = 16/43 (37%), Positives = 24/43 (55%)
Frame = +2
Query: 98 VQAQNARFRGTRLCGYGLWRPEPPVGYSYSAPRGSLRKLQLFL 226
+ +++AR G L L PP+ Y+A GSLR+L LF+
Sbjct: 518 IVSRSARVPGMCLFCTDLMDGVPPIVRHYAANTGSLRELLLFV 560
>12_02_0370 +
18139557-18140469,18140561-18140704,18140804-18140956,
18141032-18141147,18141231-18141398,18142110-18142334,
18142458-18142577
Length = 612
Score = 27.1 bits (57), Expect = 9.5
Identities = 9/21 (42%), Positives = 13/21 (61%)
Frame = +2
Query: 467 PPPEPVEQRLPRIPAVGPPPE 529
PPP+P + P P+ PPP+
Sbjct: 71 PPPQPQPEPQPAAPSQPPPPQ 91
>09_03_0023 +
11617562-11617692,11617773-11617844,11620438-11620595,
11620677-11620939,11621041-11621167,11621748-11621816,
11621931-11622120,11622309-11622672
Length = 457
Score = 27.1 bits (57), Expect = 9.5
Identities = 17/73 (23%), Positives = 29/73 (39%)
Frame = -3
Query: 350 VHHRDRVHQKSVRRKGKCCLQKGHLGIQNDHQSNSSVSAADRGRAEAS*VTLWERSSCIP 171
V +VH K++ C +K HL + ++ S ++ R + W I
Sbjct: 209 VQSLSKVHHKNLVSLVGYCSEKAHLALVYEYMSGGTLFDHLRDKTGVGESLNWASRVRIL 268
Query: 170 LEVQGAIGHSHTG 132
LE + + HTG
Sbjct: 269 LEAAQGLDYLHTG 281
>09_02_0625 +
11334418-11334499,11335067-11335164,11335758-11335831,
11335996-11336598,11336692-11337185,11338035-11338170,
11338417-11338488,11338581-11338652,11339078-11339226,
11340129-11340364,11340567-11340693,11341011-11341079,
11341172-11341361,11341465-11341857,11342084-11342195
Length = 968
Score = 27.1 bits (57), Expect = 9.5
Identities = 14/55 (25%), Positives = 24/55 (43%)
Frame = -3
Query: 296 CLQKGHLGIQNDHQSNSSVSAADRGRAEAS*VTLWERSSCIPLEVQGAIGHSHTG 132
C + HLG+ ++ N S+ RG+ W+ + I E + + HTG
Sbjct: 691 CTDQDHLGLVYEYMPNGSLYDHLRGKNAIIQRLSWQHRAKIAHEAAQGLDYLHTG 745
>04_01_0148 +
1710369-1710531,1711821-1712279,1712769-1712915,
1713004-1714170,1714378-1714430
Length = 662
Score = 27.1 bits (57), Expect = 9.5
Identities = 19/66 (28%), Positives = 30/66 (45%)
Frame = -3
Query: 332 VHQKSVRRKGKCCLQKGHLGIQNDHQSNSSVSAADRGRAEAS*VTLWERSSCIPLEVQGA 153
VH+ V+ G C + K L + + SN ++ G + WE S I LEV A
Sbjct: 384 VHRNVVKLFGCCLVSKVPLLVY-EFISNGTLYDLLHGEQSTTFSLTWEDSIRISLEVASA 442
Query: 152 IGHSHT 135
+ + H+
Sbjct: 443 LSYLHS 448
>03_06_0621 -
35147070-35148359,35148499-35148579,35148665-35148741,
35148792-35149298,35149405-35150278
Length = 942
Score = 27.1 bits (57), Expect = 9.5
Identities = 16/66 (24%), Positives = 30/66 (45%)
Frame = -3
Query: 332 VHQKSVRRKGKCCLQKGHLGIQNDHQSNSSVSAADRGRAEAS*VTLWERSSCIPLEVQGA 153
+H+ V+ G CCL+ + + SN ++ G + + W+ I LE GA
Sbjct: 652 IHRNVVKLFG-CCLESEVPLLVYEFISNGTLHGLLHGDLSTNCLLTWDDRMRIALEAAGA 710
Query: 152 IGHSHT 135
+ + H+
Sbjct: 711 LAYLHS 716
>02_05_0686 - 30900748-30902167,30903442-30904742
Length = 906
Score = 27.1 bits (57), Expect = 9.5
Identities = 11/20 (55%), Positives = 12/20 (60%)
Frame = +2
Query: 467 PPPEPVEQRLPRIPAVGPPP 526
PPP P + P PA GPPP
Sbjct: 336 PPPPPPKGPPPPPPAKGPPP 355
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,301,812
Number of Sequences: 37544
Number of extensions: 232808
Number of successful extensions: 1466
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 1256
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1459
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1190246000
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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