Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30671
(535 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_52793| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.4
SB_27033| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.2
SB_47930| Best HMM Match : Vicilin_N (HMM E-Value=1.3) 28 4.2
SB_42465| Best HMM Match : 2-oxoacid_dh (HMM E-Value=0) 28 4.2
SB_22053| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.2
SB_19794| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.2
SB_27005| Best HMM Match : NTF2 (HMM E-Value=1.1e-33) 28 5.5
SB_26886| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.5
SB_22158| Best HMM Match : Lipoprotein_15 (HMM E-Value=8.4) 27 7.3
SB_8845| Best HMM Match : Ribosomal_L30_N (HMM E-Value=1.2) 27 7.3
SB_37793| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.6
SB_28844| Best HMM Match : SpoVT_AbrB (HMM E-Value=4.7) 27 9.6
SB_24005| Best HMM Match : TFIIB (HMM E-Value=0.0014) 27 9.6
SB_56242| Best HMM Match : Sigma54_activat (HMM E-Value=1.2) 27 9.6
>SB_52793| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 532
Score = 29.9 bits (64), Expect = 1.4
Identities = 17/44 (38%), Positives = 25/44 (56%)
Frame = +3
Query: 378 ASEVMLDSVADMRVDTLVLLLYRNTSMFTYLPQNQLSKDFLVSL 509
A +V + D++V L LL NTSMF+ QN +SK ++ L
Sbjct: 266 ARKVFTNKTQDIKVSKLTRLLVANTSMFS---QNLVSKSAVIKL 306
>SB_27033| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 960
Score = 28.3 bits (60), Expect = 4.2
Identities = 16/64 (25%), Positives = 34/64 (53%), Gaps = 3/64 (4%)
Frame = -1
Query: 460 NIDVFLYKRSTRVSTRISATESSITSEAQTAAAAKGESTTETESI---RRVSAAKGNAAS 290
N D+F +++ + + R S T+S+I + +A TT++++I + A++G
Sbjct: 493 NKDIFRKQKTVQNTFRTSKTKSNIAELSMAVKSAARAKTTQSQNITKNKEEKASEGKGER 552
Query: 289 RKAT 278
+K T
Sbjct: 553 KKNT 556
>SB_47930| Best HMM Match : Vicilin_N (HMM E-Value=1.3)
Length = 769
Score = 28.3 bits (60), Expect = 4.2
Identities = 22/64 (34%), Positives = 29/64 (45%)
Frame = -1
Query: 436 RSTRVSTRISATESSITSEAQTAAAAKGESTTETESIRRVSAAKGNAASRKAT*GSRMTT 257
+ + STR S S TS T +A T T R SAAK N + + GSRM
Sbjct: 669 KDSTCSTRGSRDTSRDTSCKDTTGSA---GTRPTRQSPRKSAAKNNETPKSSRKGSRMYR 725
Query: 256 KATV 245
+ T+
Sbjct: 726 ERTL 729
>SB_42465| Best HMM Match : 2-oxoacid_dh (HMM E-Value=0)
Length = 441
Score = 28.3 bits (60), Expect = 4.2
Identities = 10/23 (43%), Positives = 12/23 (52%)
Frame = +2
Query: 467 PPPEPVEQRLPRIPAVGPPPETF 535
PPP+P P PA+ PP F
Sbjct: 180 PPPQPAPAISPSAPAISPPAPVF 202
>SB_22053| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1670
Score = 28.3 bits (60), Expect = 4.2
Identities = 22/64 (34%), Positives = 29/64 (45%)
Frame = -1
Query: 436 RSTRVSTRISATESSITSEAQTAAAAKGESTTETESIRRVSAAKGNAASRKAT*GSRMTT 257
+ + STR S S TS T +A T T R SAAK N + + GSRM
Sbjct: 1336 KDSTCSTRGSRDTSRDTSCKDTTGSA---GTRPTRQSPRKSAAKNNETPKSSRKGSRMYR 1392
Query: 256 KATV 245
+ T+
Sbjct: 1393 ERTL 1396
>SB_19794| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 138
Score = 28.3 bits (60), Expect = 4.2
Identities = 13/39 (33%), Positives = 20/39 (51%)
Frame = +1
Query: 181 LLRSQRVTQEASALPLSAADTELLLWWSFWIPRWPFWRQ 297
+LRS +V EA LP D L++ WS + W++
Sbjct: 11 VLRSSKVVFEAKCLPHDPTDPNLIINWSLYKNENGTWQE 49
>SB_27005| Best HMM Match : NTF2 (HMM E-Value=1.1e-33)
Length = 662
Score = 27.9 bits (59), Expect = 5.5
Identities = 16/36 (44%), Positives = 17/36 (47%), Gaps = 4/36 (11%)
Frame = +2
Query: 434 PLVQKHI--YVHVPPPEPVEQRLPRI--PAVGPPPE 529
P Q HI V PPP P QR PR GP P+
Sbjct: 302 PAQQTHIGQMVQTPPPRPQPQRPPRAGPGTAGPAPD 337
>SB_26886| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 6489
Score = 27.9 bits (59), Expect = 5.5
Identities = 17/63 (26%), Positives = 32/63 (50%)
Frame = -1
Query: 433 STRVSTRISATESSITSEAQTAAAAKGESTTETESIRRVSAAKGNAASRKAT*GSRMTTK 254
+T ++ ++A+ +S+ + T AAA + T + + A AA+ A+ S +T
Sbjct: 1121 ATTIAAAVTASTASVVTTTATVAAATTTAEKATTTTAAMVKATTTAAAVTASTASVVTKT 1180
Query: 253 ATV 245
ATV
Sbjct: 1181 ATV 1183
>SB_22158| Best HMM Match : Lipoprotein_15 (HMM E-Value=8.4)
Length = 184
Score = 27.5 bits (58), Expect = 7.3
Identities = 15/32 (46%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
Frame = +2
Query: 440 VQKHIYVHVPPPEPVEQRLPRIPAVGPP-PET 532
V+K++ +VPPP P LP P PP PET
Sbjct: 113 VKKYLGGYVPPPPPT-GTLPPPPVTPPPGPET 143
>SB_8845| Best HMM Match : Ribosomal_L30_N (HMM E-Value=1.2)
Length = 490
Score = 27.5 bits (58), Expect = 7.3
Identities = 11/23 (47%), Positives = 12/23 (52%)
Frame = +2
Query: 464 VPPPEPVEQRLPRIPAVGPPPET 532
+P P P P IPA GPP T
Sbjct: 144 IPAPTPTTPTSPVIPASGPPTRT 166
>SB_37793| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 698
Score = 27.1 bits (57), Expect = 9.6
Identities = 15/44 (34%), Positives = 21/44 (47%)
Frame = -3
Query: 359 KGRVHHRDRVHQKSVRRKGKCCLQKGHLGIQNDHQSNSSVSAAD 228
K R H+R Q R+ K LQ GH+ IQ D N + + +
Sbjct: 320 KFREHNRRHYEQYQQLRRLKSNLQAGHVVIQMDFAENYNCQSCE 363
>SB_28844| Best HMM Match : SpoVT_AbrB (HMM E-Value=4.7)
Length = 592
Score = 27.1 bits (57), Expect = 9.6
Identities = 15/44 (34%), Positives = 21/44 (47%)
Frame = -3
Query: 359 KGRVHHRDRVHQKSVRRKGKCCLQKGHLGIQNDHQSNSSVSAAD 228
K R H+R Q R+ K LQ GH+ IQ D N + + +
Sbjct: 215 KFREHNRRHYEQYQQLRRLKSNLQAGHVVIQMDFAENYNCQSCE 258
>SB_24005| Best HMM Match : TFIIB (HMM E-Value=0.0014)
Length = 751
Score = 27.1 bits (57), Expect = 9.6
Identities = 18/69 (26%), Positives = 31/69 (44%)
Frame = -1
Query: 487 LNWFWGRYVNIDVFLYKRSTRVSTRISATESSITSEAQTAAAAKGESTTETESIRRVSAA 308
L ++W R ID+ L S R + + + + A + ES T ++ ++AA
Sbjct: 379 LTYYWVRLKGIDITLKNFSERAGPSELTVDMNSLIKMENRTAEQLESLT-VRDLKALAAA 437
Query: 307 KGNAASRKA 281
N A R+A
Sbjct: 438 DLNGAMREA 446
>SB_56242| Best HMM Match : Sigma54_activat (HMM E-Value=1.2)
Length = 395
Score = 27.1 bits (57), Expect = 9.6
Identities = 18/69 (26%), Positives = 31/69 (44%)
Frame = -1
Query: 487 LNWFWGRYVNIDVFLYKRSTRVSTRISATESSITSEAQTAAAAKGESTTETESIRRVSAA 308
L ++W R ID+ L S R + + + + A + ES T ++ ++AA
Sbjct: 122 LTYYWVRLKGIDITLKNFSERAGPSELTVDMNSLIKMENRTAEQLESLT-VRDLKALAAA 180
Query: 307 KGNAASRKA 281
N A R+A
Sbjct: 181 DLNGAMREA 189
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,246,933
Number of Sequences: 59808
Number of extensions: 235534
Number of successful extensions: 995
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 845
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 988
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1203486867
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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