Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30671
(535 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g23230.1 68414.m02906 expressed protein 34 0.052
At5g28120.1 68418.m03396 hypothetical protein 30 0.84
At3g30816.1 68416.m03949 hypothetical protein 30 1.1
At2g06860.1 68415.m00768 Ulp1 protease family protein contains P... 30 1.1
At2g29580.1 68415.m03592 zinc finger (CCCH-type) family protein ... 29 1.9
At2g15880.1 68415.m01820 leucine-rich repeat family protein / ex... 29 1.9
At4g33970.1 68417.m04820 leucine-rich repeat family protein / ex... 29 2.6
At4g05300.1 68417.m00803 hypothetical protein 29 2.6
At5g05320.1 68418.m00573 monooxygenase, putative (MO3) similar t... 28 3.4
At4g08370.1 68417.m01382 proline-rich extensin-like family prote... 28 3.4
At3g24550.1 68416.m03083 protein kinase family protein contains ... 28 3.4
At3g22380.1 68416.m02825 expressed protein 28 3.4
At3g19020.1 68416.m02415 leucine-rich repeat family protein / ex... 28 3.4
At5g28110.1 68418.m03395 hypothetical protein 28 4.5
At4g21900.1 68417.m03166 MATE efflux family protein similar to r... 28 4.5
At3g56140.1 68416.m06240 expressed protein At2g40400 - Arabidops... 28 4.5
At1g26150.1 68414.m03192 protein kinase family protein similar t... 28 4.5
At2g30940.2 68415.m03773 protein kinase family protein contains ... 27 5.9
At2g30940.1 68415.m03772 protein kinase family protein contains ... 27 5.9
At1g12040.1 68414.m01390 leucine-rich repeat family protein / ex... 27 5.9
At1g62440.1 68414.m07044 leucine-rich repeat family protein / ex... 27 7.9
At1g31310.1 68414.m03831 hydroxyproline-rich glycoprotein family... 27 7.9
>At1g23230.1 68414.m02906 expressed protein
Length = 1615
Score = 34.3 bits (75), Expect = 0.052
Identities = 19/51 (37%), Positives = 29/51 (56%)
Frame = -1
Query: 466 YVNIDVFLYKRSTRVSTRISATESSITSEAQTAAAAKGESTTETESIRRVS 314
Y+N D FL + + +SA E+S++ Q AAA G S T ++S+ VS
Sbjct: 126 YINWDTFL----PSLLSSVSAAEASLSQGVQAAAATAGSSATSSQSVVPVS 172
>At5g28120.1 68418.m03396 hypothetical protein
Length = 506
Score = 30.3 bits (65), Expect = 0.84
Identities = 19/51 (37%), Positives = 28/51 (54%)
Frame = -1
Query: 439 KRSTRVSTRISATESSITSEAQTAAAAKGESTTETESIRRVSAAKGNAASR 287
++S R STRISA+E + S KGES T+ RR++ K + +R
Sbjct: 342 EKSVRGSTRISASEHTQGSPIDAILPIKGES-TKNGVTRRITNGKVHGGNR 391
>At3g30816.1 68416.m03949 hypothetical protein
Length = 342
Score = 29.9 bits (64), Expect = 1.1
Identities = 20/54 (37%), Positives = 27/54 (50%), Gaps = 2/54 (3%)
Frame = -1
Query: 439 KRSTRVSTRISATESSITSEAQTAAAAKGESTTE--TESIRRVSAAKGNAASRK 284
K+S R STRISA+E + S KGEST T I +GN +++
Sbjct: 179 KKSVRGSTRISASEHTQGSPMDAILPIKGESTKNGVTRWITNGKVHRGNRWTKR 232
>At2g06860.1 68415.m00768 Ulp1 protease family protein contains Pfam
profile PF02902: Ulp1 protease family, C-terminal
catalytic domain
Length = 938
Score = 29.9 bits (64), Expect = 1.1
Identities = 20/53 (37%), Positives = 27/53 (50%), Gaps = 2/53 (3%)
Frame = -1
Query: 436 RSTRVSTRISATESSITSEAQTAAAAKGESTT--ETESIRRVSAAKGNAASRK 284
+S R STRISA+E + S KGEST E+ RR KG++ +
Sbjct: 843 KSVRGSTRISASEHTQGSPMDAILPVKGESTKNGHGETDRRSVRPKGDSTDNQ 895
>At2g29580.1 68415.m03592 zinc finger (CCCH-type) family protein /
RNA recognition motif (RRM)-containing protein similar
to SP|O59800 Cell cycle control protein cwf5
{Schizosaccharomyces pombe}; contains Pfam profile:
PF00076 RNA recognition motif (aka RRM, RBD, or RNP
domain)
Length = 483
Score = 29.1 bits (62), Expect = 1.9
Identities = 12/29 (41%), Positives = 18/29 (62%)
Frame = +2
Query: 434 PLVQKHIYVHVPPPEPVEQRLPRIPAVGP 520
P++Q Y+H PPP+P Q P P++ P
Sbjct: 337 PMLQ--YYMHPPPPQPPHQDRPFYPSMDP 363
>At2g15880.1 68415.m01820 leucine-rich repeat family protein /
extensin family protein similar to extensin-like protein
[Lycopersicon esculentum] gi|5917664|gb|AAD55979;
contains leucine-rich repeats, Pfam:PF00560; contains
proline rich extensin domains, INTERPRO:IPR002965
Length = 727
Score = 29.1 bits (62), Expect = 1.9
Identities = 11/23 (47%), Positives = 12/23 (52%)
Frame = +2
Query: 458 VHVPPPEPVEQRLPRIPAVGPPP 526
+H PPP PV P P PPP
Sbjct: 507 IHSPPPPPVYSPPPPPPVYSPPP 529
>At4g33970.1 68417.m04820 leucine-rich repeat family protein /
extensin family protein similar to extensin-like protein
[Lycopersicon esculentum] gi|5917664|gb|AAD55979;
contains leucine-rich repeats, Pfam:PF00560; contains
proline rich extensin domains, INTERPRO:IPR002965
Length = 699
Score = 28.7 bits (61), Expect = 2.6
Identities = 14/27 (51%), Positives = 14/27 (51%), Gaps = 1/27 (3%)
Frame = +2
Query: 458 VHVPPPEPVEQRLPRIPAV-GPPPETF 535
VH PPP PV P P V PPP F
Sbjct: 547 VHSPPPPPVYSPPPPPPPVHSPPPPVF 573
Score = 28.3 bits (60), Expect = 3.4
Identities = 13/26 (50%), Positives = 13/26 (50%)
Frame = +2
Query: 458 VHVPPPEPVEQRLPRIPAVGPPPETF 535
VH PPP PV P P PPP F
Sbjct: 602 VHSPPP-PVHSPPPPPPVYSPPPPVF 626
>At4g05300.1 68417.m00803 hypothetical protein
Length = 387
Score = 28.7 bits (61), Expect = 2.6
Identities = 19/54 (35%), Positives = 28/54 (51%), Gaps = 2/54 (3%)
Frame = -1
Query: 439 KRSTRVSTRISATESSITSEAQTAAAAKGESTT--ETESIRRVSAAKGNAASRK 284
++S R STRISA+E + S KGEST E+ +R KG++ +
Sbjct: 301 EKSVRGSTRISASEHTQGSPMDAILPVKGESTKNGHGETDQRSVRPKGDSTDNQ 354
>At5g05320.1 68418.m00573 monooxygenase, putative (MO3) similar to
GI:3426064; identical to cDNA monooxygenase 3, partial
GI:3426065
Length = 406
Score = 28.3 bits (60), Expect = 3.4
Identities = 20/47 (42%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
Frame = -1
Query: 382 EAQTAAAAKGESTTETESIRRV-SAAKGNAASRKAT*GSRMTTKATV 245
EA A KGE+ E ES RR+ K A SRK +TT TV
Sbjct: 319 EAMKAKNMKGETEDENESYRRIEDGLKKYAGSRKWRSIDLITTSYTV 365
>At4g08370.1 68417.m01382 proline-rich extensin-like family protein
contains proline-rich extensin domains,
INTERPRO:IPR002965
Length = 350
Score = 28.3 bits (60), Expect = 3.4
Identities = 12/31 (38%), Positives = 18/31 (58%), Gaps = 2/31 (6%)
Frame = +2
Query: 449 HIYVHVPPPEPVEQRLPRIPAV--GPPPETF 535
++Y PPP V + +PRIP + PPP +
Sbjct: 181 YVYNSPPPPPYVYESVPRIPFIYSSPPPPPY 211
Score = 27.9 bits (59), Expect = 4.5
Identities = 13/30 (43%), Positives = 17/30 (56%), Gaps = 2/30 (6%)
Frame = +2
Query: 452 IYVHVPPPEPVEQRLPRIPAV--GPPPETF 535
IY PPP V + +PRIP + PPP +
Sbjct: 242 IYSSPPPPPYVYKSVPRIPFIYSSPPPPPY 271
Score = 27.5 bits (58), Expect = 5.9
Identities = 12/30 (40%), Positives = 16/30 (53%), Gaps = 2/30 (6%)
Frame = +2
Query: 452 IYVHVPPPEPVEQRLPRIPAV--GPPPETF 535
IY +PPP V PR+P + PPP +
Sbjct: 282 IYSSLPPPPYVYNSAPRVPFIYSSPPPPPY 311
>At3g24550.1 68416.m03083 protein kinase family protein contains
Pfam domain PF00069: Protein kinase domain
Length = 652
Score = 28.3 bits (60), Expect = 3.4
Identities = 12/29 (41%), Positives = 15/29 (51%)
Frame = +2
Query: 449 HIYVHVPPPEPVEQRLPRIPAVGPPPETF 535
H+ +PPP+P PR P PPP F
Sbjct: 211 HVVTSLPPPKPPSP--PRKPPPPPPPPAF 237
>At3g22380.1 68416.m02825 expressed protein
Length = 1550
Score = 28.3 bits (60), Expect = 3.4
Identities = 16/47 (34%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
Frame = -3
Query: 374 NRCRRKGRVHHRDRVHQKSVRRKG-KCCLQKGHLGIQNDHQSNSSVS 237
+R R + R RDR++ +S RR+G + + G+L D S SV+
Sbjct: 65 DRERERERDRERDRLNSRSKRRRGERLMMVHGNLDDGGDDSSEESVN 111
>At3g19020.1 68416.m02415 leucine-rich repeat family protein /
extensin family protein similar to extensin-like protein
[Lycopersicon esculentum] gi|5917664|gb|AAD55979;
contains leucine-rich repeats, Pfam:PF00560; contains
proline rich extensin domains, INTERPRO:IPR002965
Length = 956
Score = 28.3 bits (60), Expect = 3.4
Identities = 13/26 (50%), Positives = 13/26 (50%)
Frame = +2
Query: 458 VHVPPPEPVEQRLPRIPAVGPPPETF 535
VH PPP PV P P PPP F
Sbjct: 792 VHSPPP-PVHSPPPPSPIYSPPPPVF 816
>At5g28110.1 68418.m03395 hypothetical protein
Length = 493
Score = 27.9 bits (59), Expect = 4.5
Identities = 18/51 (35%), Positives = 27/51 (52%)
Frame = -1
Query: 439 KRSTRVSTRISATESSITSEAQTAAAAKGESTTETESIRRVSAAKGNAASR 287
++S R S RISA+E + S KGES T+ RR++ K + +R
Sbjct: 342 EKSVRGSIRISASEHTQGSPIDAILPIKGES-TKNGVTRRITNGKVHGGNR 391
>At4g21900.1 68417.m03166 MATE efflux family protein similar to
ripening regulated protein DDTFR18 [Lycopersicon
esculentum] GI:12231296; contains Pfam profile PF01554:
MatE
Length = 1094
Score = 27.9 bits (59), Expect = 4.5
Identities = 18/49 (36%), Positives = 28/49 (57%)
Frame = -1
Query: 424 VSTRISATESSITSEAQTAAAAKGESTTETESIRRVSAAKGNAASRKAT 278
VS+ IS ESS+T+ A+ AAAKG+ + ++ + A G + R T
Sbjct: 576 VSSGISPNESSVTAVAR-LAAAKGDGDYAFKLVKDLVAVGGVSVPRLRT 623
>At3g56140.1 68416.m06240 expressed protein At2g40400 - Arabidopsis
thaliana, EMBL:AC007020
Length = 745
Score = 27.9 bits (59), Expect = 4.5
Identities = 20/58 (34%), Positives = 31/58 (53%)
Frame = -1
Query: 487 LNWFWGRYVNIDVFLYKRSTRVSTRISATESSITSEAQTAAAAKGESTTETESIRRVS 314
LN ++G ID+ RST + T+ S S SEA + ++TTE ESI +++
Sbjct: 689 LNSYFGTQQWIDL---ARSTGLQTQKSIPASKEISEALEEPTVECDTTTEEESIDKLN 743
>At1g26150.1 68414.m03192 protein kinase family protein similar to
Pto kinase interactor 1 GI:3668069 from [Lycopersicon
esculentum]
Length = 760
Score = 27.9 bits (59), Expect = 4.5
Identities = 11/22 (50%), Positives = 12/22 (54%)
Frame = +2
Query: 467 PPPEPVEQRLPRIPAVGPPPET 532
PPP P E P P PPPE+
Sbjct: 101 PPPLPTEAPPPANPVSSPPPES 122
>At2g30940.2 68415.m03773 protein kinase family protein contains
protein kinase domain, Pfam:PF00069
Length = 447
Score = 27.5 bits (58), Expect = 5.9
Identities = 11/32 (34%), Positives = 16/32 (50%)
Frame = -3
Query: 350 VHHRDRVHQKSVRRKGKCCLQKGHLGIQNDHQ 255
+ HR R Q+ R + K CL H+ + N Q
Sbjct: 79 IFHRRRCSQEPFRLRSKLCLPLSHIPLTNKQQ 110
>At2g30940.1 68415.m03772 protein kinase family protein contains
protein kinase domain, Pfam:PF00069
Length = 445
Score = 27.5 bits (58), Expect = 5.9
Identities = 11/32 (34%), Positives = 16/32 (50%)
Frame = -3
Query: 350 VHHRDRVHQKSVRRKGKCCLQKGHLGIQNDHQ 255
+ HR R Q+ R + K CL H+ + N Q
Sbjct: 79 IFHRRRCSQEPFRLRSKLCLPLSHIPLTNKQQ 110
>At1g12040.1 68414.m01390 leucine-rich repeat family protein /
extensin family protein (LRX1) similar to extensin-like
protein [Lycopersicon esculentum]
gi|5917664|gb|AAD55979; contains leucine-rich repeats,
Pfam:PF00560; contains proline rich extensin domains,
INTERPRO:IPR002965
Length = 744
Score = 27.5 bits (58), Expect = 5.9
Identities = 12/26 (46%), Positives = 15/26 (57%), Gaps = 1/26 (3%)
Frame = +2
Query: 452 IYVHV-PPPEPVEQRLPRIPAVGPPP 526
IYV+ PPP P + P + A PPP
Sbjct: 401 IYVYSSPPPPPSSKMSPTVRAYSPPP 426
>At1g62440.1 68414.m07044 leucine-rich repeat family protein /
extensin family protein similar to extensin-like protein
[Lycopersicon esculentum] gi|5917664|gb|AAD55979;
contains leucine-rich repeats, Pfam:PF00560; contains
proline rich extensin domains, INTERPRO:IPR002965
Length = 826
Score = 27.1 bits (57), Expect = 7.9
Identities = 11/21 (52%), Positives = 11/21 (52%)
Frame = +2
Query: 467 PPPEPVEQRLPRIPAVGPPPE 529
PP PVE P P PPPE
Sbjct: 750 PPSTPVEYHPPASPNQSPPPE 770
>At1g31310.1 68414.m03831 hydroxyproline-rich glycoprotein family
protein contains proline-rich extensin domains,
INTERPRO:IPR002965;
Length = 383
Score = 27.1 bits (57), Expect = 7.9
Identities = 12/20 (60%), Positives = 13/20 (65%)
Frame = +2
Query: 467 PPPEPVEQRLPRIPAVGPPP 526
PPP P Q LPR P + PPP
Sbjct: 223 PPPPPPSQPLPR-PLLLPPP 241
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,961,615
Number of Sequences: 28952
Number of extensions: 169345
Number of successful extensions: 1211
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 661
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1196
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 984125600
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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