Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30670
(664 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC926.04c |hsp90|swo1|heat shock protein Hsp90|Schizosaccharom... 109 3e-25
SPCC895.06 |||RNA polymerase II elongator complex subunit Elp2 |... 27 2.4
SPAC26A3.17c ||SPAC8E11.11|N-methyltransferase |Schizosaccharomy... 26 4.2
SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein homolog|Schi... 26 4.2
SPAC29E6.03c |uso1|SPAC30.07c|ER to Golgi tethering factor Uso1 ... 26 5.6
SPAC24C9.14 |otu1|mug141|ubiquitin-specific protease |Schizosacc... 26 5.6
SPAC5D6.05 |sep11|pmc6, med18|mediator complex subunit Pmc6 |Sch... 25 7.4
SPAC19A8.04 |erg5||C-22 sterol desaturase Erg5 |Schizosaccharomy... 25 7.4
SPAP27G11.03 |||D123 family|Schizosaccharomyces pombe|chr 1|||Ma... 25 7.4
SPCC191.01 ||SPCC417.13|sequence orphan|Schizosaccharomyces pomb... 25 9.7
>SPAC926.04c |hsp90|swo1|heat shock protein
Hsp90|Schizosaccharomyces pombe|chr 1|||Manual
Length = 704
Score = 109 bits (263), Expect = 3e-25
Identities = 65/117 (55%), Positives = 73/117 (62%)
Frame = +3
Query: 117 AEVETFAFQAEIAQLMSLIINTFYSNKEIFLRELISNSSDALDKIRMNLSRIRQNSIVAK 296
+ ETF F+AEI+QLMSLIINT YSNKEIFLRELISN+SDALDKIR K
Sbjct: 2 SNTETFKFEAEISQLMSLIINTVYSNKEIFLRELISNASDALDKIRYQSLSDPHALDAEK 61
Query: 297 SCTSRSFPTRTRALLRSSIPVLG*PKAILGTILGTIAKSGTKAFMEALQAGADISMI 467
R P + +L +G K L LG IAKSGTK FMEA +GADISMI
Sbjct: 62 DLFIRITPDKENKILSIRDTGIGMTKNDLINNLGVIAKSGTKQFMEAAASGADISMI 118
>SPCC895.06 |||RNA polymerase II elongator complex subunit Elp2
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 760
Score = 27.1 bits (57), Expect = 2.4
Identities = 12/27 (44%), Positives = 15/27 (55%), Gaps = 4/27 (14%)
Frame = +1
Query: 379 FWGQFWEPSRNLVL----KLSWRLFKQ 447
FWG W P+ N V+ WRL+KQ
Sbjct: 329 FWGGLWNPNGNCVVCWGRTGGWRLWKQ 355
>SPAC26A3.17c ||SPAC8E11.11|N-methyltransferase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 357
Score = 26.2 bits (55), Expect = 4.2
Identities = 16/40 (40%), Positives = 20/40 (50%)
Frame = +3
Query: 171 IINTFYSNKEIFLRELISNSSDALDKIRMNLSRIRQNSIV 290
II+TF KE L +I D L +R N R+N IV
Sbjct: 198 IIDTFLQEKEPSLHVIIEPHPDVLKHMRKNGWMDRENVIV 237
>SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein
homolog|Schizosaccharomyces pombe|chr 2|||Manual
Length = 3071
Score = 26.2 bits (55), Expect = 4.2
Identities = 17/61 (27%), Positives = 29/61 (47%), Gaps = 6/61 (9%)
Frame = +2
Query: 269 DPSKLDSGKELYIKIIPNKNEGTLTIIDTGIGMTKGDFGDNFG------NHREIWY*SFH 430
DPSK ++Y K+ + + L D+GI ++ + G N +E+ Y +FH
Sbjct: 2472 DPSKAVRKPKIYSKVSTEERDFNLEQFDSGIDLSVKFLLEGIGISLVERNTQELAYLTFH 2531
Query: 431 G 433
G
Sbjct: 2532 G 2532
>SPAC29E6.03c |uso1|SPAC30.07c|ER to Golgi tethering factor Uso1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1044
Score = 25.8 bits (54), Expect = 5.6
Identities = 14/64 (21%), Positives = 32/64 (50%)
Frame = +3
Query: 90 MPEEMETQPAEVETFAFQAEIAQLMSLIINTFYSNKEIFLRELISNSSDALDKIRMNLSR 269
+ E++ + A+ E+F A+L +N NKE + +L + S+ +++ S+
Sbjct: 762 LTEKLNKKNADTESFKNTIREAELSKKALNDNLGNKENIISDLKNKLSEESTRLQELQSQ 821
Query: 270 IRQN 281
+ Q+
Sbjct: 822 LNQD 825
>SPAC24C9.14 |otu1|mug141|ubiquitin-specific protease
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 329
Score = 25.8 bits (54), Expect = 5.6
Identities = 14/42 (33%), Positives = 20/42 (47%)
Frame = +3
Query: 531 NSKTPLTTSK*RGGDLSARRFRFTVPAQNKPVKPPLGPKGTK 656
NS PL+T G + + T + N+P KPP+ TK
Sbjct: 58 NSDVPLSTLVSSGQQILVLKNAATSFSTNEPAKPPIPNAATK 99
>SPAC5D6.05 |sep11|pmc6, med18|mediator complex subunit Pmc6
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 207
Score = 25.4 bits (53), Expect = 7.4
Identities = 8/24 (33%), Positives = 15/24 (62%)
Frame = +3
Query: 573 DLSARRFRFTVPAQNKPVKPPLGP 644
D + R ++ +P+Q + +KPP P
Sbjct: 135 DTTVRIYQTLIPSQQRSIKPPFHP 158
>SPAC19A8.04 |erg5||C-22 sterol desaturase Erg5 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 541
Score = 25.4 bits (53), Expect = 7.4
Identities = 17/56 (30%), Positives = 29/56 (51%), Gaps = 1/56 (1%)
Frame = +3
Query: 189 SNKEIFLRELISNSSDALDKIRMNLSRIRQNSI-VAKSCTSRSFPTRTRALLRSSI 353
S+ +L +L+++ D L K+R RIR+ I V S T TRA+++ +
Sbjct: 325 SSAMTWLFQLLADHPDVLQKVREEQLRIRKGDIDVPLSLDLMEKMTYTRAVVKECL 380
>SPAP27G11.03 |||D123 family|Schizosaccharomyces pombe|chr
1|||Manual
Length = 319
Score = 25.4 bits (53), Expect = 7.4
Identities = 11/27 (40%), Positives = 18/27 (66%), Gaps = 3/27 (11%)
Frame = -2
Query: 414 QISRW---FPKLSPKSPLVIPIPVSMI 343
Q S W F KL+PK+ ++ PIP +++
Sbjct: 14 QFSSWYSLFRKLTPKAKVIKPIPATVL 40
>SPCC191.01 ||SPCC417.13|sequence orphan|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 178
Score = 25.0 bits (52), Expect = 9.7
Identities = 15/45 (33%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
Frame = +2
Query: 503 TLSLTA*PFQL*-NTIDDEQITWWGSFCKEVPFHSSGPEQAGEAP 634
T S T+ P +L +++D +I W FC V + P + EAP
Sbjct: 103 TSSATSTPKRLSISSMDPARIHLWRQFCNVVGYDMPTPGEQKEAP 147
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,897,064
Number of Sequences: 5004
Number of extensions: 64260
Number of successful extensions: 170
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 160
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 168
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 301829700
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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