Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30670
(664 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_01_0042 + 473912-474058,474208-474349,474442-476264 124 5e-29
08_02_1151 - 24712200-24713750,24714587-24715009,24716076-24716201 118 3e-27
09_04_0548 - 18469636-18470037,18471164-18472705,18474052-184744... 118 4e-27
09_04_0546 - 18460309-18461859,18462593-18463015,18463415-18463540 118 4e-27
06_03_1404 - 29928792-29929040,29929147-29929551,29930130-299302... 92 3e-19
08_02_1073 - 24117834-24118037,24118122-24118211,24118299-241184... 85 6e-17
12_02_0522 - 19960092-19960595,19962737-19962880,19963042-199631... 77 1e-14
09_04_0497 - 18096299-18096496,18096586-18096675,18096809-180969... 76 2e-14
08_01_0344 + 3043824-3044123,3044260-3044314,3044810-3044985,304... 30 1.4
12_02_0510 + 19846834-19848100,19848114-19848391 29 3.3
12_02_0506 - 19794383-19794670,19795066-19795140,19795337-197987... 29 3.3
09_04_0151 - 15154063-15154296,15155616-15155660,15155749-151558... 29 3.3
07_03_1794 - 29580767-29584189 29 4.4
02_05_0544 + 29876337-29876524,29876850-29876882,29878390-298785... 28 7.6
>04_01_0042 + 473912-474058,474208-474349,474442-476264
Length = 703
Score = 124 bits (300), Expect = 5e-29
Identities = 72/121 (59%), Positives = 80/121 (66%)
Frame = +3
Query: 105 ETQPAEVETFAFQAEIAQLMSLIINTFYSNKEIFLRELISNSSDALDKIRMNLSRIRQNS 284
+ Q AE ETFAFQAEI QL+SLIINTFYSNKEIFLRELISNSSDALDKIR +
Sbjct: 6 DVQMAEKETFAFQAEINQLLSLIINTFYSNKEIFLRELISNSSDALDKIRFESLTDKSKL 65
Query: 285 IVAKSCTSRSFPTRTRALLRSSIPVLG*PKAILGTILGTIAKSGTKAFMEALQAGADISM 464
R P + L +G K+ L LGTIA+SGTK FMEALQAGAD+SM
Sbjct: 66 DAQPELFIRLVPYKPSKTLSIIDSGVGMTKSDLVNNLGTIARSGTKEFMEALQAGADVSM 125
Query: 465 I 467
I
Sbjct: 126 I 126
>08_02_1151 - 24712200-24713750,24714587-24715009,24716076-24716201
Length = 699
Score = 118 bits (285), Expect = 3e-27
Identities = 68/117 (58%), Positives = 76/117 (64%)
Frame = +3
Query: 117 AEVETFAFQAEIAQLMSLIINTFYSNKEIFLRELISNSSDALDKIRMNLSRIRQNSIVAK 296
+E ETFAFQAEI QL+SLIINTFYSNKEIFLRELISNSSDALDKIR +
Sbjct: 3 SETETFAFQAEINQLLSLIINTFYSNKEIFLRELISNSSDALDKIRFESLTDKSKLDAQP 62
Query: 297 SCTSRSFPTRTRALLRSSIPVLG*PKAILGTILGTIAKSGTKAFMEALQAGADISMI 467
P + L +G K+ L LGTIA+SGTK FMEAL AGAD+SMI
Sbjct: 63 ELFIHIVPDKASNTLSIIDSGIGMTKSDLVNNLGTIARSGTKEFMEALAAGADVSMI 119
>09_04_0548 -
18469636-18470037,18471164-18472705,18474052-18474474,
18474874-18474999
Length = 830
Score = 118 bits (284), Expect = 4e-27
Identities = 68/117 (58%), Positives = 76/117 (64%)
Frame = +3
Query: 117 AEVETFAFQAEIAQLMSLIINTFYSNKEIFLRELISNSSDALDKIRMNLSRIRQNSIVAK 296
+E ETFAFQAEI QL+SLIINTFYSNKEIFLRELISNSSDALDKIR +
Sbjct: 3 SETETFAFQAEINQLLSLIINTFYSNKEIFLRELISNSSDALDKIRFESLTDKSKLDAQP 62
Query: 297 SCTSRSFPTRTRALLRSSIPVLG*PKAILGTILGTIAKSGTKAFMEALQAGADISMI 467
P + L +G K+ L LGTIA+SGTK FMEAL AGAD+SMI
Sbjct: 63 ELFIHIVPDKASNTLSIIDSGVGMTKSDLVNNLGTIARSGTKEFMEALAAGADVSMI 119
>09_04_0546 - 18460309-18461859,18462593-18463015,18463415-18463540
Length = 699
Score = 118 bits (284), Expect = 4e-27
Identities = 68/117 (58%), Positives = 76/117 (64%)
Frame = +3
Query: 117 AEVETFAFQAEIAQLMSLIINTFYSNKEIFLRELISNSSDALDKIRMNLSRIRQNSIVAK 296
+E ETFAFQAEI QL+SLIINTFYSNKEIFLRELISNSSDALDKIR +
Sbjct: 3 SETETFAFQAEINQLLSLIINTFYSNKEIFLRELISNSSDALDKIRFESLTDKSKLDAQP 62
Query: 297 SCTSRSFPTRTRALLRSSIPVLG*PKAILGTILGTIAKSGTKAFMEALQAGADISMI 467
P + L +G K+ L LGTIA+SGTK FMEAL AGAD+SMI
Sbjct: 63 ELFIHIVPDKASNTLSIIDSGVGMTKSDLVNNLGTIARSGTKEFMEALAAGADVSMI 119
>06_03_1404 -
29928792-29929040,29929147-29929551,29930130-29930280,
29930363-29930501,29930578-29930743,29930826-29931041,
29931142-29931323,29931412-29931538,29931974-29932112,
29932227-29932353,29932501-29932612,29932704-29932784,
29933330-29933483,29933569-29933689,29934003-29934045,
29934356-29934460
Length = 838
Score = 92.3 bits (219), Expect = 3e-19
Identities = 54/125 (43%), Positives = 78/125 (62%), Gaps = 4/125 (3%)
Frame = +3
Query: 105 ETQPAEVETFAFQAEIAQLMSLIINTFYSNKEIFLRELISNSSDALDKIRMNLSRIRQNS 284
+T + E F FQAE+++LM +IIN+ YSNK+IFLRELISN+SDALDKIR +
Sbjct: 98 KTLRSSAEKFEFQAEVSRLMDIIINSLYSNKDIFLRELISNASDALDKIR--FLALTDKE 155
Query: 285 IVAKSCTSR----SFPTRTRALLRSSIPVLG*PKAILGTILGTIAKSGTKAFMEALQAGA 452
++ + T++ + + +L +G K L LGTIAKSGT AF+E +Q G
Sbjct: 156 VLGEGDTAKLEIQIKLDKEKKILSIRDRGIGMTKEDLIKNLGTIAKSGTSAFVEKMQTGG 215
Query: 453 DISMI 467
D+++I
Sbjct: 216 DLNLI 220
>08_02_1073 -
24117834-24118037,24118122-24118211,24118299-24118404,
24118477-24118648,24118737-24118839,24118927-24119181,
24119259-24119336,24119449-24119541,24119660-24119800,
24119882-24119986,24120135-24120212,24120297-24120341,
24120463-24120579,24120685-24120828,24120934-24121017,
24121139-24121232,24121322-24121447,24121585-24121658,
24121870-24122098,24123124-24123611,24123702-24123749,
24123841-24124077,24124368-24124404,24125011-24125018
Length = 1051
Score = 84.6 bits (200), Expect = 6e-17
Identities = 49/122 (40%), Positives = 74/122 (60%), Gaps = 2/122 (1%)
Frame = +3
Query: 99 EMETQPAEVETFAFQAEIAQLMSLIINTFYSNKEIFLRELISNSSDALDKIRMNLSRIRQ 278
E + AE E F +QAE+++LM LI+++ YS+KE+FLREL+SN+SDALDK+R +
Sbjct: 333 EKAEETAEEEKFEYQAEVSRLMDLIVHSLYSHKEVFLRELVSNASDALDKLR--FLGVTD 390
Query: 279 NSIVAK--SCTSRSFPTRTRALLRSSIPVLG*PKAILGTILGTIAKSGTKAFMEALQAGA 452
+S++A R P + + +G K L LGTIA+SGT F++AL+
Sbjct: 391 SSLLADGGELEIRIKPDPDAGTITITDTGIGMTKDELKDCLGTIAQSGTSKFLKALKENK 450
Query: 453 DI 458
D+
Sbjct: 451 DL 452
>12_02_0522 -
19960092-19960595,19962737-19962880,19963042-19963131,
19963215-19963320,19963400-19963574,19963849-19963951,
19964382-19964636,19964726-19964803,19964908-19965000,
19965091-19965222,19965898-19966002,19966127-19966201,
19966284-19966340,19966419-19966532,19966613-19966756,
19966886-19966969,19967071-19967164,19967244-19967369,
19967507-19967580,19967672-19967875,19968234-19968388,
19968860-19968947,19969505-19969730,19970235-19970286,
19970766-19970958,19973221-19973314,19973744-19973788,
19974874-19974896
Length = 1210
Score = 77.0 bits (181), Expect = 1e-14
Identities = 66/192 (34%), Positives = 101/192 (52%), Gaps = 5/192 (2%)
Frame = +3
Query: 96 EEMETQPAEVETFAFQAEIAQLMSLIINTFYSNKEIFLRELISNSSDALDKIRMNLSRIR 275
+ +T P VE +QAE+ +LM LI+++ YSNKE+FLREL+SN+SDALDK+R LS
Sbjct: 345 DSSDTPP--VEKHEYQAEVNRLMDLIVHSLYSNKEVFLRELVSNASDALDKLRY-LSVTD 401
Query: 276 QNSIV-AKSCTSRSFPTRTRALLRSSIPVLG*PKAILGTILGTIAKSGTKAFMEAL---- 440
+ I R + ++ + +G + L LGTIA SGT F++AL
Sbjct: 402 PDLIKDGAGLDIRIQTDKENGIITITDTGIGMTRQELVDSLGTIASSGTAKFLKALKESQ 461
Query: 441 QAGADISMIWTVSVLAF*SNLLCR*RRDRFNSKTPLTTSK*RGGDLSARRFRFTVPAQNK 620
+AG D ++I V F S L + ++K+P + K + A +T+ +
Sbjct: 462 EAGVDSNLIGQFGV-GFYSAFLVS-DKVAVSTKSP-KSDKQYVWEGEAESSSYTIREETD 518
Query: 621 PVKPPLGPKGTK 656
P K L P+GT+
Sbjct: 519 PEK--LLPRGTR 528
>09_04_0497 -
18096299-18096496,18096586-18096675,18096809-18096914,
18097005-18097179,18097263-18097365,18097458-18097712,
18097791-18097868,18097986-18098078,18098179-18098319,
18098406-18098510,18098658-18098738,18098825-18098866,
18098966-18099082,18099208-18099351,18099485-18099568,
18099683-18099803,18099863-18099988,18100106-18100179,
18100388-18100657
Length = 800
Score = 76.2 bits (179), Expect = 2e-14
Identities = 50/127 (39%), Positives = 76/127 (59%), Gaps = 11/127 (8%)
Frame = +3
Query: 111 QPAEVETFAFQAEIAQLMSLIINTFYSNKEIFLRELISNSSDALDKIRMNLSRIRQNSIV 290
+ A E F +QAE+++L+ LI+++ YS+KE+FLREL+SN+SDALDK+R LS + +S++
Sbjct: 78 EEAAGEQFEYQAEVSRLLDLIVHSLYSHKEVFLRELVSNASDALDKLRF-LS-VTDSSVL 135
Query: 291 AK--SCTSRSFP---------TRTRALLRSSIPVLG*PKAILGTILGTIAKSGTKAFMEA 437
+ R P TR+ S +G K L LGTIA+SGT F++A
Sbjct: 136 SDGGELEIRIKPDPEAGTITITRSHCFASYSDTGIGMTKDELKDCLGTIAQSGTSKFLKA 195
Query: 438 LQAGADI 458
L+ D+
Sbjct: 196 LKENKDL 202
Score = 39.9 bits (89), Expect = 0.002
Identities = 25/55 (45%), Positives = 30/55 (54%), Gaps = 9/55 (16%)
Frame = +2
Query: 260 SLTDPSKLDSGKELYIKIIPNKNEGTLTII---------DTGIGMTKGDFGDNFG 397
S+TD S L G EL I+I P+ GT+TI DTGIGMTK + D G
Sbjct: 128 SVTDSSVLSDGGELEIRIKPDPEAGTITITRSHCFASYSDTGIGMTKDELKDCLG 182
>08_01_0344 + 3043824-3044123,3044260-3044314,3044810-3044985,
3045083-3045283,3045383-3045642,3045909-3046222,
3046399-3046622,3047046-3047398,3047709-3047826,
3047875-3048133,3048252-3049729
Length = 1245
Score = 30.3 bits (65), Expect = 1.4
Identities = 24/94 (25%), Positives = 41/94 (43%)
Frame = +3
Query: 183 FYSNKEIFLRELISNSSDALDKIRMNLSRIRQNSIVAKSCTSRSFPTRTRALLRSSIPVL 362
FY + I +EL+S +S+A IR S + ++ I+ K+ S P R + V+
Sbjct: 841 FYGDSAIAHQELVSLASEAASNIRTVASFVYEDEIIKKAELSLQEPMRVTKIESMKYGVV 900
Query: 363 G*PKAILGTILGTIAKSGTKAFMEALQAGADISM 464
L I +A T ++ QA + S+
Sbjct: 901 QGISLCLWNIAHAVALWYTTVLVQRKQASFENSI 934
>12_02_0510 + 19846834-19848100,19848114-19848391
Length = 514
Score = 29.1 bits (62), Expect = 3.3
Identities = 10/27 (37%), Positives = 16/27 (59%), Gaps = 1/27 (3%)
Frame = +1
Query: 361 WDD-QRRFWGQFWEPSRNLVLKLSWRL 438
W+D + WGQF P RN++ + R+
Sbjct: 304 WEDGENELWGQFLSPLRNIIAPMGGRI 330
>12_02_0506 -
19794383-19794670,19795066-19795140,19795337-19798704,
19799503-19799671,19799758-19799850
Length = 1330
Score = 29.1 bits (62), Expect = 3.3
Identities = 10/27 (37%), Positives = 16/27 (59%), Gaps = 1/27 (3%)
Frame = +1
Query: 361 WDD-QRRFWGQFWEPSRNLVLKLSWRL 438
W+D + WGQF P RN++ + R+
Sbjct: 395 WEDGENELWGQFLSPLRNIIAPMGGRI 421
>09_04_0151 - 15154063-15154296,15155616-15155660,15155749-15155820,
15155932-15156024,15156282-15156351,15156716-15156912,
15156946-15157215,15158620-15158757,15158841-15158930,
15159041-15159247,15159987-15160154,15160300-15160503,
15160584-15160670,15160748-15160861,15161689-15161835,
15161914-15162063,15162211-15162276,15162376-15162480,
15162625-15162798,15162930-15163154,15163534-15163590,
15163858-15164019,15164234-15164302,15164391-15164471,
15164823-15164925,15165011-15165156,15165285-15165359,
15165441-15165508,15165586-15165667,15165745-15165858,
15166358-15166476,15166692-15166781,15166862-15166988
Length = 1382
Score = 29.1 bits (62), Expect = 3.3
Identities = 16/61 (26%), Positives = 34/61 (55%), Gaps = 1/61 (1%)
Frame = +3
Query: 120 EVETFAFQAEIAQLMSLIINTFYSNKEIFLR-ELISNSSDALDKIRMNLSRIRQNSIVAK 296
E+ F +AEIA L ++ T +E R EL++++ + L+ R+N + +S++ +
Sbjct: 918 EMHAFDMEAEIASLQEALVTTIAEKEEALSRVELLTSAVEDLES-RLNSAESETSSLLEE 976
Query: 297 S 299
+
Sbjct: 977 T 977
>07_03_1794 - 29580767-29584189
Length = 1140
Score = 28.7 bits (61), Expect = 4.4
Identities = 20/55 (36%), Positives = 30/55 (54%), Gaps = 8/55 (14%)
Frame = +3
Query: 207 LRELISNSSDALDKIRMNLS-RIRQNSIVAKSCTSRS-------FPTRTRALLRS 347
+REL +D L K+R + R++S+V + +S S FPTRTR LR+
Sbjct: 1059 MRELEGKVNDGLQKLRESFDLSCRRSSLVEEESSSTSYHSQFKHFPTRTRVPLRN 1113
>02_05_0544 + 29876337-29876524,29876850-29876882,29878390-29878577,
29879755-29879811,29879909-29880061,29880812-29881278,
29881477-29881635,29881718-29881834,29881966-29882117,
29883436-29883530,29883619-29884525,29884604-29884688,
29884775-29884843,29885045-29885224,29885367-29885495
Length = 992
Score = 27.9 bits (59), Expect = 7.6
Identities = 9/23 (39%), Positives = 14/23 (60%)
Frame = +2
Query: 581 CKEVPFHSSGPEQAGEAPFGSEG 649
C+ + FHS+GP+ + PF G
Sbjct: 935 CRPILFHSNGPDAGNQEPFPING 957
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,139,263
Number of Sequences: 37544
Number of extensions: 435665
Number of successful extensions: 1152
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1105
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1136
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1667659452
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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