Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30670
         (664 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_50934| Best HMM Match : HSP90 (HMM E-Value=0)                       75   7e-14
SB_87| Best HMM Match : HSP90 (HMM E-Value=9.4e-10)                    43   2e-04
SB_51568| Best HMM Match : RNA_pol_Rpa2_4 (HMM E-Value=2.3)            29   2.6  
SB_52683| Best HMM Match : BCNT (HMM E-Value=3)                        28   5.9  
SB_50218| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.9  
SB_26758| Best HMM Match : 7tm_1 (HMM E-Value=3.5e-40)                 28   5.9  
SB_41595| Best HMM Match : DUF1153 (HMM E-Value=1.7)                   28   7.8  
SB_24796| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.8  
SB_5251| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   7.8  
SB_53546| Best HMM Match : DUF1153 (HMM E-Value=2)                     28   7.8  
SB_15157| Best HMM Match : DUF1153 (HMM E-Value=1.7)                   28   7.8  
SB_5665| Best HMM Match : DUF1153 (HMM E-Value=1.7)                    28   7.8  

>SB_50934| Best HMM Match : HSP90 (HMM E-Value=0)
          Length = 855

 Score = 74.5 bits (175), Expect = 7e-14
 Identities = 47/109 (43%), Positives = 62/109 (56%)
 Frame = +3

Query: 99  EMETQPAEVETFAFQAEIAQLMSLIINTFYSNKEIFLRELISNSSDALDKIRMNLSRIRQ 278
           +M+    + E   FQAE+ ++M LIIN+ Y NKEIFLRELISNSSDALDKIR+     + 
Sbjct: 68  QMKELRDKAEKHEFQAEVNRMMKLIINSLYRNKEIFLRELISNSSDALDKIRLMSLTDKT 127

Query: 279 NSIVAKSCTSRSFPTRTRALLRSSIPVLG*PKAILGTILGTIAKSGTKA 425
                   + +    +   +L  +   +G  K  L   LGTIAKSGT A
Sbjct: 128 AFDSGDELSIKIKADKENNILHVTDTGIGMTKEELIKNLGTIAKSGTIA 176


>SB_87| Best HMM Match : HSP90 (HMM E-Value=9.4e-10)
          Length = 739

 Score = 43.2 bits (97), Expect = 2e-04
 Identities = 32/123 (26%), Positives = 60/123 (48%), Gaps = 1/123 (0%)
 Frame = +3

Query: 78  AVKKMPEEMETQPAEVETFAFQAEIAQLMSLIINTFYSN-KEIFLRELISNSSDALDKIR 254
           +V+ + E  + +  E  +     ++ + + L++++  +   ++F+RE+ISN+SDAL+K+R
Sbjct: 43  SVRLLSETTDDRSVEESSETSGEDVEEPLELLMSSQKTKLSQVFIREVISNASDALEKVR 102

Query: 255 MNLSRIRQNSIVAKSCTSRSFPTRTRALLRSSIPVLG*PKAILGTILGTIAKSGTKAFME 434
                 +  S    S        +           +G  +  L   LG IAKSG+K FME
Sbjct: 103 HFFLTGKDVSETETSLEIMIETDQEAGTFTIQDNGVGMTEEELMDHLGVIAKSGSKVFME 162

Query: 435 ALQ 443
            L+
Sbjct: 163 KLK 165



 Score = 37.1 bits (82), Expect = 0.013
 Identities = 25/85 (29%), Positives = 41/85 (48%), Gaps = 2/85 (2%)
 Frame = +2

Query: 263 LTDPSKLDSGKELYIKIIPNKNEGTLTIIDTGIGMTKGDFGDNFGNHREIWY*SFHG--G 436
           LT     ++   L I I  ++  GT TI D G+GMT+ +  D+ G   +     F     
Sbjct: 106 LTGKDVSETETSLEIMIETDQEAGTFTIQDNGVGMTEEELMDHLGVIAKSGSKVFMEKLK 165

Query: 437 SSSRCRHQHDLDSFGVGFLIQFTLS 511
           + +R  H++ +  FGVGF   F ++
Sbjct: 166 NEARSSHENIIGQFGVGFYSTFMVA 190


>SB_51568| Best HMM Match : RNA_pol_Rpa2_4 (HMM E-Value=2.3)
          Length = 375

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 22/69 (31%), Positives = 33/69 (47%)
 Frame = +3

Query: 45  PSSHFV*IKQKAVKKMPEEMETQPAEVETFAFQAEIAQLMSLIINTFYSNKEIFLRELIS 224
           PS   V    KA  K  +E ET+P E+   +F+ +   ++        S+  +FLR  I 
Sbjct: 71  PSGSSVSESGKAKTKKEKEKETKPFEIALVSFEEDEFPMI-------LSDDSLFLRGFIQ 123

Query: 225 NSSDALDKI 251
             SDA +KI
Sbjct: 124 LRSDASEKI 132


>SB_52683| Best HMM Match : BCNT (HMM E-Value=3)
          Length = 225

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = +1

Query: 295 RAVHQDHSQQERGHSYDHRYRYWDDQRRFW 384
           R   +D    +R   YD R RY+DD+ R++
Sbjct: 139 RDYDRDRDYDDRDRYYDDRDRYYDDRDRYY 168


>SB_50218| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 203

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 17/50 (34%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
 Frame = +1

Query: 265 HGSVKTR*WQRAVHQDHSQQERGHSYDHRYRYWDDQRRFWGQFWE-PSRN 411
           H   K R   R   +DH  Q+R H   HR R  +++R     ++E PSR+
Sbjct: 18  HKKEKQRGRDRDQDRDHRDQDRDHRGRHRDRDREERRHKENAYFEKPSRD 67


>SB_26758| Best HMM Match : 7tm_1 (HMM E-Value=3.5e-40)
          Length = 1413

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 17/52 (32%), Positives = 29/52 (55%), Gaps = 1/52 (1%)
 Frame = +3

Query: 120 EVETFAF-QAEIAQLMSLIINTFYSNKEIFLRELISNSSDALDKIRMNLSRI 272
           E ETF+   A I    S+++N FY+      R L+ N++   D+I++ L+ I
Sbjct: 577 ERETFSITSANIGGNDSIVVNLFYNVTLELRRTLLQNNNVRKDRIQIRLNLI 628


>SB_41595| Best HMM Match : DUF1153 (HMM E-Value=1.7)
          Length = 289

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 18/43 (41%), Positives = 21/43 (48%), Gaps = 2/43 (4%)
 Frame = -3

Query: 140 EREGFNLRWLCLHFFRHFL--YCFLFNSHKMTRGFLTHVFQSA 18
           ERE  +L W C HF  + L     L   HK     LTHVF +A
Sbjct: 116 EREALSLVWACEHFQMYLLGTKFKLITDHKP----LTHVFNNA 154


>SB_24796| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 409

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 18/43 (41%), Positives = 21/43 (48%), Gaps = 2/43 (4%)
 Frame = -3

Query: 140 EREGFNLRWLCLHFFRHFL--YCFLFNSHKMTRGFLTHVFQSA 18
           ERE  +L W C HF  + L     L   HK     LTHVF +A
Sbjct: 116 EREALSLVWACEHFQMYLLGTKFKLITDHKP----LTHVFNNA 154


>SB_5251| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 945

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 18/43 (41%), Positives = 21/43 (48%), Gaps = 2/43 (4%)
 Frame = -3

Query: 140 EREGFNLRWLCLHFFRHFL--YCFLFNSHKMTRGFLTHVFQSA 18
           ERE  +L W C HF  + L     L   HK     LTHVF +A
Sbjct: 479 EREALSLVWACEHFQMYLLGTKFKLITDHKP----LTHVFNNA 517


>SB_53546| Best HMM Match : DUF1153 (HMM E-Value=2)
          Length = 306

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 18/43 (41%), Positives = 21/43 (48%), Gaps = 2/43 (4%)
 Frame = -3

Query: 140 EREGFNLRWLCLHFFRHFL--YCFLFNSHKMTRGFLTHVFQSA 18
           ERE  +L W C HF  + L     L   HK     LTHVF +A
Sbjct: 116 EREALSLVWACEHFQMYLLGTKFKLITDHKP----LTHVFNNA 154


>SB_15157| Best HMM Match : DUF1153 (HMM E-Value=1.7)
          Length = 412

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 18/43 (41%), Positives = 21/43 (48%), Gaps = 2/43 (4%)
 Frame = -3

Query: 140 EREGFNLRWLCLHFFRHFL--YCFLFNSHKMTRGFLTHVFQSA 18
           ERE  +L W C HF  + L     L   HK     LTHVF +A
Sbjct: 116 EREALSLVWACEHFQMYLLGTKFKLITDHKP----LTHVFNNA 154


>SB_5665| Best HMM Match : DUF1153 (HMM E-Value=1.7)
          Length = 246

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 18/43 (41%), Positives = 21/43 (48%), Gaps = 2/43 (4%)
 Frame = -3

Query: 140 EREGFNLRWLCLHFFRHFL--YCFLFNSHKMTRGFLTHVFQSA 18
           ERE  +L W C HF  + L     L   HK     LTHVF +A
Sbjct: 116 EREALSLVWACEHFQMYLLGTKFKLITDHKP----LTHVFNNA 154


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,646,882
Number of Sequences: 59808
Number of extensions: 474132
Number of successful extensions: 1265
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1219
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1259
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1705624125
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)