Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30670
         (664 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       23   2.6  
AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase ...    22   6.0  

>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 16/57 (28%), Positives = 26/57 (45%)
 Frame = +3

Query: 213 ELISNSSDALDKIRMNLSRIRQNSIVAKSCTSRSFPTRTRALLRSSIPVLG*PKAIL 383
           +++S     L K R  L+ +  +  VAK   S   P  + +   SSIP L    A++
Sbjct: 321 QVVSQLEIQLQKERDRLTAMMHHLHVAKQMASPEPPKSSESSTGSSIPKLNLSTALM 377


>AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase
           protein.
          Length = 628

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 8/29 (27%), Positives = 13/29 (44%)
 Frame = +1

Query: 289 WQRAVHQDHSQQERGHSYDHRYRYWDDQR 375
           W   +H D  +   GH  +   +Y D +R
Sbjct: 491 WMGVLHGDEVEYVFGHPLNKSLKYSDKER 519


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 192,668
Number of Sequences: 438
Number of extensions: 4271
Number of successful extensions: 3
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 19977660
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)