Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30669
(539 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBP35G2.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr... 30 0.19
SPAC22E12.11c |set3||histone lysine methyltransferase Set3|Schiz... 29 0.44
SPBC1D7.02c |scr1||transcription factor Scr1|Schizosaccharomyces... 27 2.3
SPAC3H8.08c |||transcription factor|Schizosaccharomyces pombe|ch... 26 3.1
SPAC1F8.03c |str3||siderophore-iron transporter Str3 |Schizosacc... 26 3.1
SPAC14C4.15c ||SPAPJ760.01c|dipeptidyl aminopeptidase |Schizosac... 26 4.1
SPAC1805.17 |crm1|caf2, SPAC1B2.01|nuclear export receptor Crm1|... 26 4.1
SPAC9E9.12c |ybt1|abc1|ABC transporter Ybt1|Schizosaccharomyces ... 25 5.4
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 25 5.4
SPAC227.15 |||protein phosphatase regulatory subunit Reg1 |Schiz... 25 7.2
>SPBP35G2.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 1060
Score = 30.3 bits (65), Expect = 0.19
Identities = 21/72 (29%), Positives = 33/72 (45%), Gaps = 2/72 (2%)
Frame = +2
Query: 17 APQAWSTMSAVTAATGLISSNPSVTPRLSLASNAHQKYQRTL--RRLSSGRSPASPYPET 190
AP + ST + +AA+ +IS+ V ASNA T+ R+ + RS P+
Sbjct: 202 APSSSSTATPASAASEIISNKDPVVEPTHSASNAANSGSNTIRARQTTRTRSNTLPWSPR 261
Query: 191 VTGSSPAWRVSP 226
V G + + P
Sbjct: 262 VFGPTLGYNTPP 273
>SPAC22E12.11c |set3||histone lysine methyltransferase
Set3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 859
Score = 29.1 bits (62), Expect = 0.44
Identities = 17/52 (32%), Positives = 24/52 (46%)
Frame = +2
Query: 14 PAPQAWSTMSAVTAATGLISSNPSVTPRLSLASNAHQKYQRTLRRLSSGRSP 169
P + T++ V G + PSV R S+A++ H K R LS R P
Sbjct: 592 PCKRGLGTITTVHKKHGSVDHLPSVKRRRSIANDFHGKPDYNKRSLSIERKP 643
>SPBC1D7.02c |scr1||transcription factor Scr1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 565
Score = 26.6 bits (56), Expect = 2.3
Identities = 17/43 (39%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
Frame = +2
Query: 116 AHQKYQRTLRRLS-SGRSPASPYPETVTGSSPAWRVSPVLSPA 241
AH +YQR R +S +P+SP T SP V+P+++PA
Sbjct: 381 AHFRYQRRSRPVSPCSTAPSSPTFST-RSFSPTPDVTPLVTPA 422
>SPAC3H8.08c |||transcription factor|Schizosaccharomyces pombe|chr
1|||Manual
Length = 563
Score = 26.2 bits (55), Expect = 3.1
Identities = 13/40 (32%), Positives = 22/40 (55%)
Frame = +2
Query: 137 TLRRLSSGRSPASPYPETVTGSSPAWRVSPVLSPAKKEKF 256
T+ +++ G P+ + E + S VSP ++P K EKF
Sbjct: 51 TIDKMNVGPHPS--HSENASDSETTLEVSPDINPKKNEKF 88
>SPAC1F8.03c |str3||siderophore-iron transporter Str3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 630
Score = 26.2 bits (55), Expect = 3.1
Identities = 11/22 (50%), Positives = 14/22 (63%)
Frame = +2
Query: 374 FFYLLFDFLRSIYFREITIIFY 439
FFY L +L+S+YF T I Y
Sbjct: 379 FFYYLAGYLQSMYFTTYTWILY 400
>SPAC14C4.15c ||SPAPJ760.01c|dipeptidyl aminopeptidase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 853
Score = 25.8 bits (54), Expect = 4.1
Identities = 13/33 (39%), Positives = 19/33 (57%)
Frame = -3
Query: 267 SDRRNFSFFAGDKTGLTLHAGDEPVTVSGYGEA 169
++R NFS F D + EP+TVS +GE+
Sbjct: 92 TNRENFSLFKNDS-----YKQKEPITVSHFGES 119
>SPAC1805.17 |crm1|caf2, SPAC1B2.01|nuclear export receptor
Crm1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1078
Score = 25.8 bits (54), Expect = 4.1
Identities = 12/33 (36%), Positives = 20/33 (60%)
Frame = +2
Query: 47 VTAATGLISSNPSVTPRLSLASNAHQKYQRTLR 145
+++ T LISSNP++ L L + ++ TLR
Sbjct: 386 LSSPTSLISSNPNMLANLPLRKHIYKDILSTLR 418
>SPAC9E9.12c |ybt1|abc1|ABC transporter Ybt1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1427
Score = 25.4 bits (53), Expect = 5.4
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = -1
Query: 407 YFSKNRKEDRKRSKNYGRLSFSFCNTVES 321
+FS N K+D +N SFSF +T+ S
Sbjct: 801 FFSSNTKKDNIEEENLEPHSFSFDSTLAS 829
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 25.4 bits (53), Expect = 5.4
Identities = 17/74 (22%), Positives = 30/74 (40%)
Frame = +2
Query: 5 NNFPAPQAWSTMSAVTAATGLISSNPSVTPRLSLASNAHQKYQRTLRRLSSGRSPASPYP 184
N+ P P ++ + T+ +S VTP + S + SS + +SP P
Sbjct: 274 NSSPLPTTSTSCTTSTSIPPTGNSTTPVTPTVPPTSTSSTSTPPPPASTSSTGTSSSPLP 333
Query: 185 ETVTGSSPAWRVSP 226
T T + + + P
Sbjct: 334 STSTSCTTSTSIPP 347
>SPAC227.15 |||protein phosphatase regulatory subunit Reg1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 873
Score = 25.0 bits (52), Expect = 7.2
Identities = 15/47 (31%), Positives = 22/47 (46%)
Frame = +2
Query: 101 SLASNAHQKYQRTLRRLSSGRSPASPYPETVTGSSPAWRVSPVLSPA 241
S+ + KY R L+ G ASP + SSP+ + +SPA
Sbjct: 734 SVQNKTPTKYHRELKSSKDGHEQASP----LVSSSPSGSFTSQISPA 776
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,922,475
Number of Sequences: 5004
Number of extensions: 37667
Number of successful extensions: 120
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 116
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 120
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 221892220
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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