Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30669
(539 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_02_0546 - 9381989-9383733,9385838-9386054 32 0.34
03_01_0528 + 3966687-3967643 31 0.78
10_08_0814 - 20779400-20779487,20779780-20780030,20780528-207808... 30 1.0
01_06_1291 + 36032088-36032299,36032737-36033314,36034494-36036229 30 1.4
05_03_0486 + 14616354-14617200,14617288-14617329,14619433-14620508 29 1.8
02_05_0867 - 32338313-32338331,32338372-32338496,32338972-323391... 29 1.8
05_05_0109 - 22454539-22456268,22457069-22457279 29 2.4
02_04_0411 + 22670418-22670499,22670708-22671045 29 2.4
07_03_1709 - 28873172-28873327,28873519-28873584,28874067-288741... 29 3.1
07_03_1204 + 24855052-24855210,24855411-24855974,24856157-248562... 29 3.1
08_02_1165 + 24830547-24831154,24832048-24832159,24832250-248324... 28 5.5
06_03_0941 + 26179682-26182327 28 5.5
03_06_0484 + 34233042-34233258,34235317-34237049 28 5.5
03_02_0540 + 9340379-9340592,9341250-9342988 28 5.5
02_05_0851 + 32215521-32215803,32216371-32217746,32217873-32217938 28 5.5
01_05_0627 + 23802235-23802853,23803357-23803430,23804207-238043... 28 5.5
12_01_0400 + 3169597-3170504,3170510-3171269 27 7.2
11_06_0221 - 21387365-21387652,21387892-21389952,21390360-21390395 27 7.2
08_02_1354 - 26337628-26338540,26339638-26339981 27 7.2
04_04_0293 - 24189344-24189350,24189804-24190026,24190411-241905... 27 7.2
03_06_0599 + 34984869-34985319,34986581-34987563 27 7.2
02_02_0116 + 6955924-6956112,6957461-6958441 27 7.2
01_06_0554 + 30179641-30179658,30179725-30180126,30180580-301808... 27 7.2
08_01_0364 - 3218309-3218414,3218882-3218941,3219898-3219969,322... 27 9.6
03_01_0223 - 1766292-1766442,1767621-1767676,1767798-1767891,176... 27 9.6
01_03_0045 + 11929624-11929890,11930500-11930551,11932683-119331... 27 9.6
>03_02_0546 - 9381989-9383733,9385838-9386054
Length = 653
Score = 31.9 bits (69), Expect = 0.34
Identities = 19/68 (27%), Positives = 31/68 (45%)
Frame = +1
Query: 130 PANTPSAKFWPFPRFPVPGDCHRLITCVEGQPRLITCEEGKVSTIRT*PVKIQRSFLIVV 309
P+ K WPF P P D ++ +G+ + + EE S + T +I +FL
Sbjct: 85 PSVQADMKMWPFKVVPGPADKPMIVVTYKGEEKKFSAEEIS-SMVLTKMKEIAEAFLSTT 143
Query: 310 ARN*LSTV 333
+N + TV
Sbjct: 144 IKNAVITV 151
>03_01_0528 + 3966687-3967643
Length = 318
Score = 30.7 bits (66), Expect = 0.78
Identities = 21/67 (31%), Positives = 30/67 (44%), Gaps = 1/67 (1%)
Frame = +2
Query: 41 SAVTAATGLISSNPSV-TPRLSLASNAHQKYQRTLRRLSSGRSPASPYPETVTGSSPAWR 217
+A AA G ++ P+ L+ N H +QR +S SP P P T T ++P
Sbjct: 105 AAAAAARGGAAAVPAYGLLNLNAQHNVHVIHQRLQELKNSSSSPTKPPPRTPTRANPPPP 164
Query: 218 VSPVLSP 238
P SP
Sbjct: 165 PLPTSSP 171
>10_08_0814 -
20779400-20779487,20779780-20780030,20780528-20780812,
20781563-20782008,20782095-20782485
Length = 486
Score = 30.3 bits (65), Expect = 1.0
Identities = 21/58 (36%), Positives = 28/58 (48%), Gaps = 1/58 (1%)
Frame = +2
Query: 71 SSNPSVTPRLSLASNAHQKYQRTLRRLSSGRSPASPYPETVTGSSPAWRVSPV-LSPA 241
+SN S + +A + T R SS SPASP P + S PA P+ +SPA
Sbjct: 14 ASNASTSSSTKRTRSARRLPSLTRPRASSSPSPASPSPPPPSASHPAPPSPPLAVSPA 71
>01_06_1291 + 36032088-36032299,36032737-36033314,36034494-36036229
Length = 841
Score = 29.9 bits (64), Expect = 1.4
Identities = 12/39 (30%), Positives = 19/39 (48%)
Frame = +1
Query: 130 PANTPSAKFWPFPRFPVPGDCHRLITCVEGQPRLITCEE 246
P+ K WPF P PGD ++ +G+ + + EE
Sbjct: 276 PSVQSDMKLWPFKVIPGPGDKPMIVVQYKGEEKQFSAEE 314
>05_03_0486 + 14616354-14617200,14617288-14617329,14619433-14620508
Length = 654
Score = 29.5 bits (63), Expect = 1.8
Identities = 16/37 (43%), Positives = 22/37 (59%)
Frame = +3
Query: 114 MPIKSTSEHSVG*VLAVPPLPRTRRLSQAHHLRGGSA 224
+P + ++H G L+ PPLP RRL+ AHH G A
Sbjct: 438 IPNGTLADHLYG-PLSHPPLPWRRRLAIAHHTAQGIA 473
>02_05_0867 -
32338313-32338331,32338372-32338496,32338972-32339186,
32340043-32340086,32340187-32340548,32341357-32341650
Length = 352
Score = 29.5 bits (63), Expect = 1.8
Identities = 16/45 (35%), Positives = 21/45 (46%)
Frame = +2
Query: 74 SNPSVTPRLSLASNAHQKYQRTLRRLSSGRSPASPYPETVTGSSP 208
S S+ P S+A + + R S SPASP P V G +P
Sbjct: 7 SRESLLPSFLYTSSAARSFATGATRFPSPVSPASPAPGAVGGGAP 51
>05_05_0109 - 22454539-22456268,22457069-22457279
Length = 646
Score = 29.1 bits (62), Expect = 2.4
Identities = 12/39 (30%), Positives = 18/39 (46%)
Frame = +1
Query: 130 PANTPSAKFWPFPRFPVPGDCHRLITCVEGQPRLITCEE 246
P+ K WPF P PGD ++ +G+ + EE
Sbjct: 83 PSVQSDMKLWPFKVVPGPGDKPMIVVQYKGEEKQFAAEE 121
>02_04_0411 + 22670418-22670499,22670708-22671045
Length = 139
Score = 29.1 bits (62), Expect = 2.4
Identities = 11/22 (50%), Positives = 11/22 (50%)
Frame = -2
Query: 76 GGDQASCSCDCAHRRPSLGCRE 11
GGD C C HRR GC E
Sbjct: 97 GGDDGDCGGPCEHRRCEYGCCE 118
>07_03_1709 -
28873172-28873327,28873519-28873584,28874067-28874127,
28875406-28875462,28876301-28876531,28876685-28876799,
28876897-28877136,28877222-28877316,28877406-28877585,
28877663-28877839,28877920-28878890
Length = 782
Score = 28.7 bits (61), Expect = 3.1
Identities = 20/68 (29%), Positives = 31/68 (45%)
Frame = +2
Query: 32 STMSAVTAATGLISSNPSVTPRLSLASNAHQKYQRTLRRLSSGRSPASPYPETVTGSSPA 211
+ M+ GL+ ++ TP A+ A L R +SGR +P P +V+ S +
Sbjct: 52 TVMAKARKELGLLPASGPGTPTSVAAAAAAAHSPFMLSRQNSGRCGTAPSPLSVSSPS-S 110
Query: 212 WRVSPVLS 235
W PV S
Sbjct: 111 WAPPPVFS 118
>07_03_1204 +
24855052-24855210,24855411-24855974,24856157-24856225,
24856304-24856426,24856733-24856864,24857143-24857266,
24857547-24857614,24857849-24857991,24858615-24858722,
24858826-24858901,24859442-24859578,24859660-24859819,
24859901-24860080,24860159-24860275,24860540-24860695,
24861209-24861379,24861479-24861591,24861669-24861792,
24861961-24862056,24862139-24862201,24862299-24862364
Length = 982
Score = 28.7 bits (61), Expect = 3.1
Identities = 12/27 (44%), Positives = 16/27 (59%)
Frame = -1
Query: 407 YFSKNRKEDRKRSKNYGRLSFSFCNTV 327
Y +EDR ++ RLSF FCNT+
Sbjct: 331 YDGDTPREDRTWIRDNARLSFHFCNTI 357
>08_02_1165 +
24830547-24831154,24832048-24832159,24832250-24832421,
24832486-24832700,24833922-24833996,24834367-24834390
Length = 401
Score = 27.9 bits (59), Expect = 5.5
Identities = 20/68 (29%), Positives = 30/68 (44%)
Frame = +2
Query: 14 PAPQAWSTMSAVTAATGLISSNPSVTPRLSLASNAHQKYQRTLRRLSSGRSPASPYPETV 193
P+P A ++ SA AA G S +L A Q+YQ R +G + A P V
Sbjct: 77 PSPSASASASASAAAAGHFFSQQQQQQQLQTFLTASQQYQ---HRGGAGAAAAPPSAYGV 133
Query: 194 TGSSPAWR 217
++ +R
Sbjct: 134 AAAAAGYR 141
>06_03_0941 + 26179682-26182327
Length = 881
Score = 27.9 bits (59), Expect = 5.5
Identities = 12/25 (48%), Positives = 15/25 (60%)
Frame = -3
Query: 93 GVTEGLEEIRPVAAVTALIVDQAWG 19
G E EE+RPV AV ++ AWG
Sbjct: 648 GTAEAEEELRPVLAVHGFMMFVAWG 672
>03_06_0484 + 34233042-34233258,34235317-34237049
Length = 649
Score = 27.9 bits (59), Expect = 5.5
Identities = 10/32 (31%), Positives = 17/32 (53%)
Frame = +1
Query: 151 KFWPFPRFPVPGDCHRLITCVEGQPRLITCEE 246
K WP+ P PGD ++ +G+ + + EE
Sbjct: 92 KMWPYKVIPGPGDKPMIVVQYKGEEKQFSAEE 123
>03_02_0540 + 9340379-9340592,9341250-9342988
Length = 650
Score = 27.9 bits (59), Expect = 5.5
Identities = 12/33 (36%), Positives = 17/33 (51%)
Frame = +1
Query: 148 AKFWPFPRFPVPGDCHRLITCVEGQPRLITCEE 246
AK WPF P PGD + +G+ + + EE
Sbjct: 90 AKLWPFKVLPGPGDKPMIGVQYKGEEKQFSAEE 122
>02_05_0851 + 32215521-32215803,32216371-32217746,32217873-32217938
Length = 574
Score = 27.9 bits (59), Expect = 5.5
Identities = 12/29 (41%), Positives = 16/29 (55%)
Frame = +3
Query: 210 RGGSAPSYHLRRRKSFDDQNLTCEDPEIV 296
RGG HL + KS D +N+T E+V
Sbjct: 78 RGGGVGDLHLSQSKSNDGENVTIASSEVV 106
>01_05_0627 +
23802235-23802853,23803357-23803430,23804207-23804364,
23804640-23804964
Length = 391
Score = 27.9 bits (59), Expect = 5.5
Identities = 23/65 (35%), Positives = 31/65 (47%), Gaps = 6/65 (9%)
Frame = +2
Query: 2 RNNFPAPQAWSTMSAVTAATGLISS--NPSVTPRLSLASNAHQKYQR--TLRRLSSG--R 163
R + P W S + AA + SS PS +PRLS +S + + T R S+ R
Sbjct: 68 RTSSSRPAPWWRRSRMAAAVAVTSSPPRPSTSPRLSWSSWEADELEEAATAPRPSTSRRR 127
Query: 164 SPASP 178
PASP
Sbjct: 128 RPASP 132
>12_01_0400 + 3169597-3170504,3170510-3171269
Length = 555
Score = 27.5 bits (58), Expect = 7.2
Identities = 15/35 (42%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
Frame = +2
Query: 146 RLSSGRSPAS-PYPETVTGSSPAWRVSPVLSPAKK 247
R+S +PAS P P SSPA+R+ L+P K
Sbjct: 232 RISGAATPASSPPPPAANWSSPAYRMLQELTPFVK 266
>11_06_0221 - 21387365-21387652,21387892-21389952,21390360-21390395
Length = 794
Score = 27.5 bits (58), Expect = 7.2
Identities = 20/56 (35%), Positives = 28/56 (50%)
Frame = +2
Query: 71 SSNPSVTPRLSLASNAHQKYQRTLRRLSSGRSPASPYPETVTGSSPAWRVSPVLSP 238
+S S T R+ + ++ ++ + R S RSPASP SP RVSP SP
Sbjct: 301 ASRTSPTRRVRVDADNARRPRSPDRAASPARSPASPARR--GPQSPQRRVSPAQSP 354
>08_02_1354 - 26337628-26338540,26339638-26339981
Length = 418
Score = 27.5 bits (58), Expect = 7.2
Identities = 14/32 (43%), Positives = 20/32 (62%)
Frame = +2
Query: 17 APQAWSTMSAVTAATGLISSNPSVTPRLSLAS 112
A +A +TMSA+ ATG+ S PS T + A+
Sbjct: 275 AAEAMATMSAMDFATGVDESGPSPTATAAAAA 306
>04_04_0293 -
24189344-24189350,24189804-24190026,24190411-24190529,
24191331-24191578
Length = 198
Score = 27.5 bits (58), Expect = 7.2
Identities = 22/70 (31%), Positives = 32/70 (45%)
Frame = +2
Query: 14 PAPQAWSTMSAVTAATGLISSNPSVTPRLSLASNAHQKYQRTLRRLSSGRSPASPYPETV 193
PAP+A T A A ++ P+ P+ + + K T S SPA+P PE
Sbjct: 18 PAPKA--TAPAGPARKAPAAAGPA--PKATAPAGPAPKATATAAPSSKAPSPAAPSPEAP 73
Query: 194 TGSSPAWRVS 223
+ +PA R S
Sbjct: 74 SPVAPAARPS 83
>03_06_0599 + 34984869-34985319,34986581-34987563
Length = 477
Score = 27.5 bits (58), Expect = 7.2
Identities = 11/20 (55%), Positives = 13/20 (65%)
Frame = +1
Query: 139 TPSAKFWPFPRFPVPGDCHR 198
TPS P P+FP PG+C R
Sbjct: 417 TPSPSPPPQPQFPCPGNCSR 436
>02_02_0116 + 6955924-6956112,6957461-6958441
Length = 389
Score = 27.5 bits (58), Expect = 7.2
Identities = 10/16 (62%), Positives = 11/16 (68%)
Frame = -1
Query: 161 GQNLADGVFAGTFDGH 114
G + DGVF G FDGH
Sbjct: 64 GFGMEDGVFCGVFDGH 79
>01_06_0554 +
30179641-30179658,30179725-30180126,30180580-30180892,
30180966-30181358,30181442-30182427
Length = 703
Score = 27.5 bits (58), Expect = 7.2
Identities = 11/31 (35%), Positives = 18/31 (58%)
Frame = +2
Query: 80 PSVTPRLSLASNAHQKYQRTLRRLSSGRSPA 172
P +PRL+ +N+H + TL+ S R P+
Sbjct: 321 PRRSPRLARQNNSHDSAENTLKERSEERQPS 351
>08_01_0364 - 3218309-3218414,3218882-3218941,3219898-3219969,
3220080-3223195,3223303-3223561,3223665-3223951,
3224029-3224364,3224463-3224604,3224690-3224910,
3224990-3225151,3225242-3225400,3225488-3225787,
3226306-3226569,3227370-3227453
Length = 1855
Score = 27.1 bits (57), Expect = 9.6
Identities = 21/77 (27%), Positives = 33/77 (42%), Gaps = 1/77 (1%)
Frame = +2
Query: 14 PAPQAWSTMSAVTAATGLISSNPSVTPRLSLASNAHQKYQRTLRRLSSGRSPASPYPETV 193
P+ +S A + ++ +S +P S S + + + S SP SPY T
Sbjct: 1748 PSSAKYSPSHAYSPSSPRLSPYSQTSPNYSPTSPTYSPTSPSYSQPSPSYSPTSPY-TTS 1806
Query: 194 TGSSPAWR-VSPVLSPA 241
G SP + SP SP+
Sbjct: 1807 GGPSPDYSPTSPNYSPS 1823
>03_01_0223 -
1766292-1766442,1767621-1767676,1767798-1767891,
1768004-1768071,1768441-1769585,1770072-1770168,
1770265-1770279
Length = 541
Score = 27.1 bits (57), Expect = 9.6
Identities = 15/46 (32%), Positives = 21/46 (45%)
Frame = -3
Query: 201 EPVTVSGYGEAGERPELSRRSVRWYF*WAFEANDSLGVTEGLEEIR 64
E +T G E + SRR VRW+ W G+ G +EI+
Sbjct: 497 EDIT-DGLTEGDDEVVRSRRGVRWWMLWRRRRLGRNGIAVGRKEIK 541
>01_03_0045 +
11929624-11929890,11930500-11930551,11932683-11933103,
11933574-11934162
Length = 442
Score = 27.1 bits (57), Expect = 9.6
Identities = 14/42 (33%), Positives = 21/42 (50%)
Frame = +2
Query: 71 SSNPSVTPRLSLASNAHQKYQRTLRRLSSGRSPASPYPETVT 196
S NPS+ P +SL+ AH+K + T + + R P T
Sbjct: 370 SINPSMRPHVSLSRVAHRKVRATCPKCPTRRLDRQSLPPPST 411
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,026,260
Number of Sequences: 37544
Number of extensions: 288724
Number of successful extensions: 1089
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 1043
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1087
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1198356516
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -