Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30669
         (539 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_13694| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.46 
SB_7514| Best HMM Match : OATP (HMM E-Value=0)                         30   1.1  
SB_12832| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.4  
SB_12083| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.4  
SB_26849| Best HMM Match : FlgH (HMM E-Value=7.5)                      30   1.4  
SB_1618| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   3.2  
SB_34492| Best HMM Match : Ank (HMM E-Value=1.4e-39)                   28   4.2  
SB_2813| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   7.4  
SB_29861| Best HMM Match : RRM_1 (HMM E-Value=1.10002e-42)             27   9.8  
SB_23993| Best HMM Match : SRCR (HMM E-Value=0.0036)                   27   9.8  
SB_10326| Best HMM Match : CBM_14 (HMM E-Value=5.3e-15)                27   9.8  
SB_51898| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.8  

>SB_13694| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 767

 Score = 31.5 bits (68), Expect = 0.46
 Identities = 13/33 (39%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
 Frame = +1

Query: 13  PCTPGLVYDERSHSCNWPDLLQ-PFCNPEAVVG 108
           PC  GL+Y+E++  C+WP  +  P  N +  VG
Sbjct: 106 PCPGGLLYNEKTKQCDWPRNVDCPMGNLDCGVG 138


>SB_7514| Best HMM Match : OATP (HMM E-Value=0)
          Length = 763

 Score = 30.3 bits (65), Expect = 1.1
 Identities = 17/45 (37%), Positives = 21/45 (46%)
 Frame = -2

Query: 175 GSGGTART*PTECSLVLLMGI*SQRQPRGYRRVGGDQASCSCDCA 41
           G+GGT       CS V + GI +Q     Y       ASC+ DCA
Sbjct: 485 GAGGTFPL-LASCSTVTMAGINTQGSTNSYPAFLNSYASCNADCA 528


>SB_12832| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1169

 Score = 29.9 bits (64), Expect = 1.4
 Identities = 19/50 (38%), Positives = 20/50 (40%), Gaps = 2/50 (4%)
 Frame = +1

Query: 106 GFKCP--SKVPANTPSAKFWPFPRFPVPGDCHRLITCVEGQPRLITCEEG 249
           GFKCP  S  P    S K  PFP      DC      V GQ     C +G
Sbjct: 233 GFKCPTTSAAPIACSSGKKCPFPEGVGIQDCGEGTYSVGGQATCTDCPKG 282


>SB_12083| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1671

 Score = 29.9 bits (64), Expect = 1.4
 Identities = 21/75 (28%), Positives = 31/75 (41%)
 Frame = +1

Query: 16  CTPGLVYDERSHSCNWPDLLQPFCNPEAVVGFKCPSKVPANTPSAKFWPFPRFPVPGDCH 195
           C  GL ++E    C++P  + P C+  +  GF C  K   N   +           G+CH
Sbjct: 347 CPTGLAFNEAIGMCDYPSNV-PGCSGSSGSGF-CHEKSDGNYKDS-----------GNCH 393

Query: 196 RLITCVEGQPRLITC 240
             I C  G    +TC
Sbjct: 394 GFIMCSNGHTYHMTC 408



 Score = 27.5 bits (58), Expect = 7.4
 Identities = 18/73 (24%), Positives = 27/73 (36%), Gaps = 5/73 (6%)
 Frame = +1

Query: 16  CTPGLVYDERSHSCNWPDLL----QPFCNPEAVVGFKCPSK-VPANTPSAKFWPFPRFPV 180
           C   L YD     C W D +    +P  +P        P +  P  +P  +      +  
Sbjct: 548 CPSNLRYDPAKGRCEWADTVDCGQRPTISPHPPKPTTMPPQPTPPKSPFCEEKKNGDYAD 607

Query: 181 PGDCHRLITCVEG 219
           P +C+  ITC  G
Sbjct: 608 PSNCNGFITCSNG 620


>SB_26849| Best HMM Match : FlgH (HMM E-Value=7.5)
          Length = 317

 Score = 29.9 bits (64), Expect = 1.4
 Identities = 14/34 (41%), Positives = 16/34 (47%)
 Frame = +2

Query: 152 SSGRSPASPYPETVTGSSPAWRVSPVLSPAKKEK 253
           S  + PA P        SP WR    LS AKK+K
Sbjct: 7   SKKKKPAKPPALPPPSESPVWRTGNALSSAKKDK 40


>SB_1618| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1371

 Score = 28.7 bits (61), Expect = 3.2
 Identities = 13/40 (32%), Positives = 20/40 (50%), Gaps = 3/40 (7%)
 Frame = +1

Query: 97  AVVGFKCPSKVPANTPSAK---FWPFPRFPVPGDCHRLIT 207
           A+  + CP  +P  +PS +   F+P P  PVP      +T
Sbjct: 319 ALTFYPCPHLLPLPSPSTRALTFYPCPHLPVPSPSTHALT 358


>SB_34492| Best HMM Match : Ank (HMM E-Value=1.4e-39)
          Length = 894

 Score = 28.3 bits (60), Expect = 4.2
 Identities = 17/46 (36%), Positives = 22/46 (47%), Gaps = 1/46 (2%)
 Frame = -3

Query: 282 LHRS-GSDRRNFSFFAGDKTGLTLHAGDEPVTVSGYGEAGERPELS 148
           LHR+  SD       AG       H G+ P+ V  YGE GE  +L+
Sbjct: 625 LHRAKDSDTVELLLEAGANIDCVDHDGNTPLHVKCYGETGEPTDLA 670


>SB_2813| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1362

 Score = 27.5 bits (58), Expect = 7.4
 Identities = 18/59 (30%), Positives = 30/59 (50%), Gaps = 4/59 (6%)
 Frame = +2

Query: 5   NNFPAPQAWSTMSAVTAATGLISSNPS----VTPRLSLASNAHQKYQRTLRRLSSGRSP 169
           N+F   Q+ S++ +  +  GL+   P     +TPRLS      Q+++   R LS+  SP
Sbjct: 596 NDFDVVQS-SSLPSRFSGRGLMEDEPDDDVMMTPRLSSTPEDRQEWRERRRALSNDNSP 653


>SB_29861| Best HMM Match : RRM_1 (HMM E-Value=1.10002e-42)
          Length = 1531

 Score = 27.1 bits (57), Expect = 9.8
 Identities = 17/46 (36%), Positives = 20/46 (43%), Gaps = 5/46 (10%)
 Frame = +3

Query: 168 PLPRTRRLS---QAHHLR--GGSAPSYHLRRRKSFDDQNLTCEDPE 290
           PLPR        +  H R   G+   Y   RR SFDD    CE+ E
Sbjct: 731 PLPRVHEEQDQVEKEHRRTPDGTQEPYEKHRRPSFDDNEEECENGE 776


>SB_23993| Best HMM Match : SRCR (HMM E-Value=0.0036)
          Length = 189

 Score = 27.1 bits (57), Expect = 9.8
 Identities = 13/35 (37%), Positives = 18/35 (51%), Gaps = 3/35 (8%)
 Frame = +1

Query: 52  SCNWPDLLQPFCNPEAVVGFKC---PSKVPANTPS 147
           SCN  +  QP CN    V  +C   P  +P +TP+
Sbjct: 28  SCNRSNWAQPTCNHSRDVTVQCKIRPEMIPKSTPT 62


>SB_10326| Best HMM Match : CBM_14 (HMM E-Value=5.3e-15)
          Length = 134

 Score = 27.1 bits (57), Expect = 9.8
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = +1

Query: 16  CTPGLVYDERSHSCNW 63
           C PG V+D R  +CNW
Sbjct: 53  CGPGRVWDPRITNCNW 68


>SB_51898| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1712

 Score = 27.1 bits (57), Expect = 9.8
 Identities = 13/35 (37%), Positives = 16/35 (45%)
 Frame = +3

Query: 153  VLAVPPLPRTRRLSQAHHLRGGSAPSYHLRRRKSF 257
            + A PP P T  LS+A HL     P       +SF
Sbjct: 1660 LFAPPPTPNTNYLSEATHLSDQECPPSPTATERSF 1694


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,483,744
Number of Sequences: 59808
Number of extensions: 298670
Number of successful extensions: 933
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 871
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 933
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1227799733
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)