Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30669
(539 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z82286-2|CAB05306.1| 397|Caenorhabditis elegans Hypothetical pr... 31 0.53
U00055-4|AAA50720.2| 431|Caenorhabditis elegans Hypothetical pr... 29 1.6
AF039043-1|AAB94194.1| 5105|Caenorhabditis elegans Hypothetical ... 29 1.6
U00032-4|AAL32216.1| 953|Caenorhabditis elegans Rabphilin prote... 29 2.1
U00032-3|AAL32217.1| 1028|Caenorhabditis elegans Rabphilin prote... 29 2.1
U00032-2|AAL32218.1| 962|Caenorhabditis elegans Rabphilin prote... 29 2.1
U00032-1|AAM48523.1| 1106|Caenorhabditis elegans Rabphilin prote... 29 2.1
AF399852-1|AAK84870.1| 953|Caenorhabditis elegans rabphilin pro... 29 2.1
Z47809-8|CAH10845.1| 968|Caenorhabditis elegans Hypothetical pr... 29 2.8
Z47809-6|CAD57700.1| 1124|Caenorhabditis elegans Hypothetical pr... 29 2.8
Z47809-5|CAD57699.1| 1019|Caenorhabditis elegans Hypothetical pr... 29 2.8
Z47809-4|CAA87782.1| 1016|Caenorhabditis elegans Hypothetical pr... 29 2.8
Z36719-11|CAH04695.1| 968|Caenorhabditis elegans Hypothetical p... 29 2.8
Z36719-10|CAD57686.1| 1124|Caenorhabditis elegans Hypothetical p... 29 2.8
Z36719-9|CAD57685.1| 1019|Caenorhabditis elegans Hypothetical pr... 29 2.8
Z36719-8|CAA85318.1| 1016|Caenorhabditis elegans Hypothetical pr... 29 2.8
U86640-1|AAB47273.1| 1016|Caenorhabditis elegans MEL-11 protein. 29 2.8
U23527-5|AAC46572.2| 915|Caenorhabditis elegans Hypothetical pr... 29 2.8
U70851-7|AAB09130.3| 640|Caenorhabditis elegans Hypothetical pr... 28 3.7
U41263-13|AAC24428.2| 1844|Caenorhabditis elegans Hypothetical p... 28 4.9
U42835-2|AAA83586.1| 617|Caenorhabditis elegans Chitinase prote... 27 6.5
>Z82286-2|CAB05306.1| 397|Caenorhabditis elegans Hypothetical
protein W02A2.3 protein.
Length = 397
Score = 31.1 bits (67), Expect = 0.53
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = +1
Query: 4 EQFPCTPGLVYDERSHSCNWPDLLQP 81
++ PC PG V+D +S C W QP
Sbjct: 306 QRMPCAPGTVFDVQSQVCVWDTNSQP 331
>U00055-4|AAA50720.2| 431|Caenorhabditis elegans Hypothetical
protein R02F2.4 protein.
Length = 431
Score = 29.5 bits (63), Expect = 1.6
Identities = 11/32 (34%), Positives = 19/32 (59%)
Frame = +1
Query: 10 FPCTPGLVYDERSHSCNWPDLLQPFCNPEAVV 105
F C P LV++E S C++P+ C +A++
Sbjct: 337 FECPPSLVFNENSLICDYPETSLKCCMEDALL 368
>AF039043-1|AAB94194.1| 5105|Caenorhabditis elegans Hypothetical
protein F39C12.1 protein.
Length = 5105
Score = 29.5 bits (63), Expect = 1.6
Identities = 22/57 (38%), Positives = 28/57 (49%), Gaps = 1/57 (1%)
Frame = +2
Query: 89 TPRLSLASNAHQKYQRTLRRLSSGRSPASPYPET-VTGSSPAWRVSPVLSPAKKEKF 256
TP +S S A Q Q+TLR+ + + YP T T S A VSP S +K F
Sbjct: 3243 TPEISFESLAQQMAQKTLRKEEASKI-LEHYPVTEQTSPSTAEPVSPTKSGSKLSFF 3298
>U00032-4|AAL32216.1| 953|Caenorhabditis elegans Rabphilin protein
1, isoform a protein.
Length = 953
Score = 29.1 bits (62), Expect = 2.1
Identities = 18/59 (30%), Positives = 29/59 (49%)
Frame = +2
Query: 59 TGLISSNPSVTPRLSLASNAHQKYQRTLRRLSSGRSPASPYPETVTGSSPAWRVSPVLS 235
+GL S+ S+TP AS+ H T RR+S+ S ++ +G+S P+ S
Sbjct: 446 SGLTCSSSSLTPLQQQASHDHHSGGGTPRRISNPDRTTSRVAQSASGTSLVTPPPPISS 504
>U00032-3|AAL32217.1| 1028|Caenorhabditis elegans Rabphilin protein
1, isoform b protein.
Length = 1028
Score = 29.1 bits (62), Expect = 2.1
Identities = 18/59 (30%), Positives = 29/59 (49%)
Frame = +2
Query: 59 TGLISSNPSVTPRLSLASNAHQKYQRTLRRLSSGRSPASPYPETVTGSSPAWRVSPVLS 235
+GL S+ S+TP AS+ H T RR+S+ S ++ +G+S P+ S
Sbjct: 521 SGLTCSSSSLTPLQQQASHDHHSGGGTPRRISNPDRTTSRVAQSASGTSLVTPPPPISS 579
>U00032-2|AAL32218.1| 962|Caenorhabditis elegans Rabphilin protein
1, isoform c protein.
Length = 962
Score = 29.1 bits (62), Expect = 2.1
Identities = 18/59 (30%), Positives = 29/59 (49%)
Frame = +2
Query: 59 TGLISSNPSVTPRLSLASNAHQKYQRTLRRLSSGRSPASPYPETVTGSSPAWRVSPVLS 235
+GL S+ S+TP AS+ H T RR+S+ S ++ +G+S P+ S
Sbjct: 455 SGLTCSSSSLTPLQQQASHDHHSGGGTPRRISNPDRTTSRVAQSASGTSLVTPPPPISS 513
>U00032-1|AAM48523.1| 1106|Caenorhabditis elegans Rabphilin protein
1, isoform d protein.
Length = 1106
Score = 29.1 bits (62), Expect = 2.1
Identities = 18/59 (30%), Positives = 29/59 (49%)
Frame = +2
Query: 59 TGLISSNPSVTPRLSLASNAHQKYQRTLRRLSSGRSPASPYPETVTGSSPAWRVSPVLS 235
+GL S+ S+TP AS+ H T RR+S+ S ++ +G+S P+ S
Sbjct: 599 SGLTCSSSSLTPLQQQASHDHHSGGGTPRRISNPDRTTSRVAQSASGTSLVTPPPPISS 657
>AF399852-1|AAK84870.1| 953|Caenorhabditis elegans rabphilin
protein.
Length = 953
Score = 29.1 bits (62), Expect = 2.1
Identities = 18/59 (30%), Positives = 29/59 (49%)
Frame = +2
Query: 59 TGLISSNPSVTPRLSLASNAHQKYQRTLRRLSSGRSPASPYPETVTGSSPAWRVSPVLS 235
+GL S+ S+TP AS+ H T RR+S+ S ++ +G+S P+ S
Sbjct: 446 SGLTCSSSSLTPLQQQASHDHHSGGGTPRRISNPDRTTSRVAQSASGTSLVTPPPPISS 504
>Z47809-8|CAH10845.1| 968|Caenorhabditis elegans Hypothetical
protein C06C3.1d protein.
Length = 968
Score = 28.7 bits (61), Expect = 2.8
Identities = 21/65 (32%), Positives = 29/65 (44%)
Frame = +2
Query: 5 NNFPAPQAWSTMSAVTAATGLISSNPSVTPRLSLASNAHQKYQRTLRRLSSGRSPASPYP 184
N + Q ST SA+ A +SS PS+ L+S A LSS S A+ P
Sbjct: 783 NGMSSTQPLSTRSAIVAG---LSSAPSMRTTAPLSSTATSSRFMPSSSLSSNGSSANQQP 839
Query: 185 ETVTG 199
++ G
Sbjct: 840 SSIYG 844
>Z47809-6|CAD57700.1| 1124|Caenorhabditis elegans Hypothetical protein
C06C3.1c protein.
Length = 1124
Score = 28.7 bits (61), Expect = 2.8
Identities = 21/65 (32%), Positives = 29/65 (44%)
Frame = +2
Query: 5 NNFPAPQAWSTMSAVTAATGLISSNPSVTPRLSLASNAHQKYQRTLRRLSSGRSPASPYP 184
N + Q ST SA+ A +SS PS+ L+S A LSS S A+ P
Sbjct: 939 NGMSSTQPLSTRSAIVAG---LSSAPSMRTTAPLSSTATSSRFMPSSSLSSNGSSANQQP 995
Query: 185 ETVTG 199
++ G
Sbjct: 996 SSIYG 1000
>Z47809-5|CAD57699.1| 1019|Caenorhabditis elegans Hypothetical protein
C06C3.1b protein.
Length = 1019
Score = 28.7 bits (61), Expect = 2.8
Identities = 21/65 (32%), Positives = 29/65 (44%)
Frame = +2
Query: 5 NNFPAPQAWSTMSAVTAATGLISSNPSVTPRLSLASNAHQKYQRTLRRLSSGRSPASPYP 184
N + Q ST SA+ A +SS PS+ L+S A LSS S A+ P
Sbjct: 834 NGMSSTQPLSTRSAIVAG---LSSAPSMRTTAPLSSTATSSRFMPSSSLSSNGSSANQQP 890
Query: 185 ETVTG 199
++ G
Sbjct: 891 SSIYG 895
>Z47809-4|CAA87782.1| 1016|Caenorhabditis elegans Hypothetical protein
C06C3.1a protein.
Length = 1016
Score = 28.7 bits (61), Expect = 2.8
Identities = 21/65 (32%), Positives = 29/65 (44%)
Frame = +2
Query: 5 NNFPAPQAWSTMSAVTAATGLISSNPSVTPRLSLASNAHQKYQRTLRRLSSGRSPASPYP 184
N + Q ST SA+ A +SS PS+ L+S A LSS S A+ P
Sbjct: 831 NGMSSTQPLSTRSAIVAG---LSSAPSMRTTAPLSSTATSSRFMPSSSLSSNGSSANQQP 887
Query: 185 ETVTG 199
++ G
Sbjct: 888 SSIYG 892
>Z36719-11|CAH04695.1| 968|Caenorhabditis elegans Hypothetical
protein C06C3.1d protein.
Length = 968
Score = 28.7 bits (61), Expect = 2.8
Identities = 21/65 (32%), Positives = 29/65 (44%)
Frame = +2
Query: 5 NNFPAPQAWSTMSAVTAATGLISSNPSVTPRLSLASNAHQKYQRTLRRLSSGRSPASPYP 184
N + Q ST SA+ A +SS PS+ L+S A LSS S A+ P
Sbjct: 783 NGMSSTQPLSTRSAIVAG---LSSAPSMRTTAPLSSTATSSRFMPSSSLSSNGSSANQQP 839
Query: 185 ETVTG 199
++ G
Sbjct: 840 SSIYG 844
>Z36719-10|CAD57686.1| 1124|Caenorhabditis elegans Hypothetical
protein C06C3.1c protein.
Length = 1124
Score = 28.7 bits (61), Expect = 2.8
Identities = 21/65 (32%), Positives = 29/65 (44%)
Frame = +2
Query: 5 NNFPAPQAWSTMSAVTAATGLISSNPSVTPRLSLASNAHQKYQRTLRRLSSGRSPASPYP 184
N + Q ST SA+ A +SS PS+ L+S A LSS S A+ P
Sbjct: 939 NGMSSTQPLSTRSAIVAG---LSSAPSMRTTAPLSSTATSSRFMPSSSLSSNGSSANQQP 995
Query: 185 ETVTG 199
++ G
Sbjct: 996 SSIYG 1000
>Z36719-9|CAD57685.1| 1019|Caenorhabditis elegans Hypothetical protein
C06C3.1b protein.
Length = 1019
Score = 28.7 bits (61), Expect = 2.8
Identities = 21/65 (32%), Positives = 29/65 (44%)
Frame = +2
Query: 5 NNFPAPQAWSTMSAVTAATGLISSNPSVTPRLSLASNAHQKYQRTLRRLSSGRSPASPYP 184
N + Q ST SA+ A +SS PS+ L+S A LSS S A+ P
Sbjct: 834 NGMSSTQPLSTRSAIVAG---LSSAPSMRTTAPLSSTATSSRFMPSSSLSSNGSSANQQP 890
Query: 185 ETVTG 199
++ G
Sbjct: 891 SSIYG 895
>Z36719-8|CAA85318.1| 1016|Caenorhabditis elegans Hypothetical protein
C06C3.1a protein.
Length = 1016
Score = 28.7 bits (61), Expect = 2.8
Identities = 21/65 (32%), Positives = 29/65 (44%)
Frame = +2
Query: 5 NNFPAPQAWSTMSAVTAATGLISSNPSVTPRLSLASNAHQKYQRTLRRLSSGRSPASPYP 184
N + Q ST SA+ A +SS PS+ L+S A LSS S A+ P
Sbjct: 831 NGMSSTQPLSTRSAIVAG---LSSAPSMRTTAPLSSTATSSRFMPSSSLSSNGSSANQQP 887
Query: 185 ETVTG 199
++ G
Sbjct: 888 SSIYG 892
>U86640-1|AAB47273.1| 1016|Caenorhabditis elegans MEL-11 protein.
Length = 1016
Score = 28.7 bits (61), Expect = 2.8
Identities = 21/65 (32%), Positives = 29/65 (44%)
Frame = +2
Query: 5 NNFPAPQAWSTMSAVTAATGLISSNPSVTPRLSLASNAHQKYQRTLRRLSSGRSPASPYP 184
N + Q ST SA+ A +SS PS+ L+S A LSS S A+ P
Sbjct: 831 NGMSSTQPLSTRSAIVAG---LSSAPSMRTTAPLSSTATSSRFMPSSSLSSNGSSANQQP 887
Query: 185 ETVTG 199
++ G
Sbjct: 888 SSIYG 892
>U23527-5|AAC46572.2| 915|Caenorhabditis elegans Hypothetical
protein K09E2.1 protein.
Length = 915
Score = 28.7 bits (61), Expect = 2.8
Identities = 19/60 (31%), Positives = 30/60 (50%)
Frame = +2
Query: 2 RNNFPAPQAWSTMSAVTAATGLISSNPSVTPRLSLASNAHQKYQRTLRRLSSGRSPASPY 181
RN P Q TMSA+TA L+S +VT ++ A + ++ +RR+ R P+
Sbjct: 625 RNPLPLLQ---TMSAITAFPTLLSMEKAVTLPINNALGVSKPIKKKIRRIIKRRRNILPF 681
>U70851-7|AAB09130.3| 640|Caenorhabditis elegans Hypothetical
protein M02B7.5 protein.
Length = 640
Score = 28.3 bits (60), Expect = 3.7
Identities = 14/52 (26%), Positives = 25/52 (48%)
Frame = +2
Query: 83 SVTPRLSLASNAHQKYQRTLRRLSSGRSPASPYPETVTGSSPAWRVSPVLSP 238
S+T R + + +A + R R + RSP SP P + + + ++SP
Sbjct: 95 SLTSRYATSLSAQLRIDRAARSTTLDRSPPSPAPPVLVNLQNSNMIDSLMSP 146
>U41263-13|AAC24428.2| 1844|Caenorhabditis elegans Hypothetical
protein T19D12.1 protein.
Length = 1844
Score = 27.9 bits (59), Expect = 4.9
Identities = 20/67 (29%), Positives = 30/67 (44%)
Frame = +2
Query: 35 TMSAVTAATGLISSNPSVTPRLSLASNAHQKYQRTLRRLSSGRSPASPYPETVTGSSPAW 214
T S + TG I+S T S+ + ++ +SS + P T TGS+PA
Sbjct: 800 TTSGAASTTGSITSTQQATSTSSVITTGSTSAPQSSTAVSS----TTTSPSTTTGSTPAP 855
Query: 215 RVSPVLS 235
+ S V S
Sbjct: 856 QSSTVAS 862
>U42835-2|AAA83586.1| 617|Caenorhabditis elegans Chitinase protein
1 protein.
Length = 617
Score = 27.5 bits (58), Expect = 6.5
Identities = 14/37 (37%), Positives = 16/37 (43%)
Frame = +1
Query: 139 TPSAKFWPFPRFPVPGDCHRLITCVEGQPRLITCEEG 249
TP+ K F VP DC + I CV G C G
Sbjct: 561 TPAFKCTKDGFFGVPSDCLKFIRCVNGISYNFECPNG 597
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,899,704
Number of Sequences: 27780
Number of extensions: 230034
Number of successful extensions: 803
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 764
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 803
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1081316076
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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