Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30669
         (539 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamat...    24   0.86 
AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamat...    24   0.86 
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    23   2.0  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    23   2.0  
AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    21   6.1  
DQ257631-1|ABB82366.1|  424|Apis mellifera yellow e3-like protei...    21   8.1  
AF388659-3|AAK71993.1|  548|Apis mellifera 1D-myo-inositol-trisp...    21   8.1  

>AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamate
           receptor 1 protein.
          Length = 843

 Score = 24.2 bits (50), Expect = 0.86
 Identities = 6/17 (35%), Positives = 11/17 (64%)
 Frame = +1

Query: 13  PCTPGLVYDERSHSCNW 63
           PC PG++  ++  +C W
Sbjct: 452 PCEPGMIKKQQGDTCCW 468


>AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 933

 Score = 24.2 bits (50), Expect = 0.86
 Identities = 6/17 (35%), Positives = 11/17 (64%)
 Frame = +1

Query: 13  PCTPGLVYDERSHSCNW 63
           PC PG++  ++  +C W
Sbjct: 542 PCEPGMIKKQQGDTCCW 558


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 23.0 bits (47), Expect = 2.0
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = -3

Query: 219  TLHAGDEPVTVSGYGEAGERPELS 148
            T   G++   V G G+  +RPELS
Sbjct: 1862 TFVGGNQGNVVPGNGDRSDRPELS 1885


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 23.0 bits (47), Expect = 2.0
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = -3

Query: 219  TLHAGDEPVTVSGYGEAGERPELS 148
            T   G++   V G G+  +RPELS
Sbjct: 1858 TFVGGNQGNVVPGNGDRSDRPELS 1881


>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 21.4 bits (43), Expect = 6.1
 Identities = 13/40 (32%), Positives = 18/40 (45%)
 Frame = +2

Query: 314 VIDFQLYCKMKTTAVHNFWTFFYLLFDFLRSIYFREITII 433
           +I  QL  +     V N W F  ++ D +  I F   TII
Sbjct: 501 IITDQLKSEELNAKVTNDWKFAAMVIDRMCLIIFTLFTII 540


>DQ257631-1|ABB82366.1|  424|Apis mellifera yellow e3-like protein
           protein.
          Length = 424

 Score = 21.0 bits (42), Expect = 8.1
 Identities = 13/44 (29%), Positives = 20/44 (45%)
 Frame = +2

Query: 314 VIDFQLYCKMKTTAVHNFWTFFYLLFDFLRSIYFREITIIFYCY 445
           V D +  CK     + +   F  L++DF  S  +R    +FY Y
Sbjct: 186 VRDTEDKCKDTFAYIADVTGFALLVYDFRNSRSWRITNNLFYPY 229


>AF388659-3|AAK71993.1|  548|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform C protein.
          Length = 548

 Score = 21.0 bits (42), Expect = 8.1
 Identities = 7/17 (41%), Positives = 11/17 (64%)
 Frame = -3

Query: 312 RDHNEERSLDLHRSGSD 262
           +DHN+E+S + H    D
Sbjct: 55  QDHNKEKSKNNHHCNQD 71


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 132,244
Number of Sequences: 438
Number of extensions: 2941
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 15336375
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)