Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30669
         (539 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g30710.2 68417.m04353 expressed protein contains Pfam domain,...    31   0.37 
At4g30710.1 68417.m04352 expressed protein contains Pfam domain,...    31   0.37 
At2g24070.1 68415.m02875 expressed protein contains Pfam domain,...    31   0.65 
At3g30650.1 68416.m03880 expressed protein                             30   1.1  
At1g68725.1 68414.m07853 arabinogalactan-protein, putative (AGP1...    30   1.1  
At1g08540.1 68414.m00946 RNA polymerase sigma subunit SigB (sigB...    29   2.6  
At5g24880.1 68418.m02946 expressed protein ; expression supporte...    28   3.5  
At4g28760.2 68417.m04113 expressed protein predicted protein. Ar...    28   3.5  
At4g28760.1 68417.m04112 expressed protein predicted protein. Ar...    28   3.5  
At4g13410.1 68417.m02094 glycosyl transferase family 2 protein s...    28   4.6  
At5g35460.1 68418.m04217 expressed protein                             27   6.1  
At4g11745.1 68417.m01873 kelch repeat-containing protein similar...    27   8.0  
At2g43900.1 68415.m05457 endonuclease/exonuclease/phosphatase fa...    27   8.0  

>At4g30710.2 68417.m04353 expressed protein contains Pfam domain,
           PF04484: Family of unknown function (DUF566)
          Length = 644

 Score = 31.5 bits (68), Expect = 0.37
 Identities = 22/77 (28%), Positives = 37/77 (48%)
 Frame = +2

Query: 23  QAWSTMSAVTAATGLISSNPSVTPRLSLASNAHQKYQRTLRRLSSGRSPASPYPETVTGS 202
           Q+ +   AV+A     S+ PS T   +   +       + RRLS+GR P S +P T+   
Sbjct: 62  QSVAAKRAVSAERKRPSTPPSPTSPSTPIRDLSIDLPASSRRLSTGRLPESLWPSTMRSL 121

Query: 203 SPAWRVSPVLSPAKKEK 253
           S +++   V  P  K++
Sbjct: 122 SVSFQSDSVSVPVSKKE 138


>At4g30710.1 68417.m04352 expressed protein contains Pfam domain,
           PF04484: Family of unknown function (DUF566)
          Length = 644

 Score = 31.5 bits (68), Expect = 0.37
 Identities = 22/77 (28%), Positives = 37/77 (48%)
 Frame = +2

Query: 23  QAWSTMSAVTAATGLISSNPSVTPRLSLASNAHQKYQRTLRRLSSGRSPASPYPETVTGS 202
           Q+ +   AV+A     S+ PS T   +   +       + RRLS+GR P S +P T+   
Sbjct: 62  QSVAAKRAVSAERKRPSTPPSPTSPSTPIRDLSIDLPASSRRLSTGRLPESLWPSTMRSL 121

Query: 203 SPAWRVSPVLSPAKKEK 253
           S +++   V  P  K++
Sbjct: 122 SVSFQSDSVSVPVSKKE 138


>At2g24070.1 68415.m02875 expressed protein contains Pfam domain,
           PF04484: Family of unknown function (DUF566)
          Length = 609

 Score = 30.7 bits (66), Expect = 0.65
 Identities = 17/38 (44%), Positives = 24/38 (63%), Gaps = 1/38 (2%)
 Frame = +2

Query: 143 RRLSSGRSPASPYPETVTGSSPAWRVSPVLSP-AKKEK 253
           RRLS+GR P S +P T+   S +++   V  P +KKEK
Sbjct: 111 RRLSTGRLPESLWPSTMRSLSVSFQSDSVSVPVSKKEK 148


>At3g30650.1 68416.m03880 expressed protein
          Length = 122

 Score = 29.9 bits (64), Expect = 1.1
 Identities = 11/19 (57%), Positives = 15/19 (78%)
 Frame = -1

Query: 410 KYFSKNRKEDRKRSKNYGR 354
           K F +NR+E RKR +NYG+
Sbjct: 6   KNFGRNRQEKRKRRRNYGK 24


>At1g68725.1 68414.m07853 arabinogalactan-protein, putative (AGP19)
           non-consensus splice site at the intron:exon boundary
           (AT:exon)
          Length = 247

 Score = 29.9 bits (64), Expect = 1.1
 Identities = 13/26 (50%), Positives = 17/26 (65%)
 Frame = +2

Query: 164 SPASPYPETVTGSSPAWRVSPVLSPA 241
           SP +P P     S PA +V+PV+SPA
Sbjct: 69  SPVTPPPAVTPTSPPAPKVAPVISPA 94


>At1g08540.1 68414.m00946 RNA polymerase sigma subunit SigB (sigB) /
           sigma factor 2 (SIG2) identical to sigma factor SigB
           [Arabidopsis thaliana] GI:5478446, plastid RNA
           polymerase sigma-subunit [Arabidopsis thaliana]
           GI:2879922, sigma factor [Arabidopsis thaliana]
           GI:2597831, sigma factor 2 (SIG2) [Arabidopsis thaliana]
           GI:2353173; contains Pfam profiles PF04545: Sigma-70,
           region 4, PF04539: Sigma-70 region 3, PF04542: Sigma-70
           region 2
          Length = 572

 Score = 28.7 bits (61), Expect = 2.6
 Identities = 15/39 (38%), Positives = 20/39 (51%)
 Frame = +2

Query: 92  PRLSLASNAHQKYQRTLRRLSSGRSPASPYPETVTGSSP 208
           P +SLA  + ++ +R  RR       AS  P   TGSSP
Sbjct: 206 PSVSLAVRSTRQTERKARRAKGLEKTASGIPSVKTGSSP 244


>At5g24880.1 68418.m02946 expressed protein ; expression supported
           by MPSS
          Length = 443

 Score = 28.3 bits (60), Expect = 3.5
 Identities = 20/59 (33%), Positives = 29/59 (49%)
 Frame = +2

Query: 68  ISSNPSVTPRLSLASNAHQKYQRTLRRLSSGRSPASPYPETVTGSSPAWRVSPVLSPAK 244
           ISS P     L   +N+    Q+ LRR S  R P+S      T +SP  + S  +SP++
Sbjct: 57  ISSRPDAGKLLKKNNNSLDDNQKLLRRRSFDRPPSS-LTSPSTSASPRIQKSLNVSPSR 114


>At4g28760.2 68417.m04113 expressed protein predicted protein.
           Arabidopsis thaliana
          Length = 924

 Score = 28.3 bits (60), Expect = 3.5
 Identities = 20/67 (29%), Positives = 31/67 (46%), Gaps = 2/67 (2%)
 Frame = +2

Query: 59  TGLISSNPSVTPRLSLASNAHQKYQRTLRRLSSGRSPASPYPETVTGSSPAWRVSPV--L 232
           TG + S+  V+      +N   K +R   + SS    A+P P T+TG +    V P+  L
Sbjct: 579 TGSLKSSWKVSNLFFFKNNKASKEKRDASQCSSMSQLAAPSPVTLTGKTSEDCVFPIDCL 638

Query: 233 SPAKKEK 253
            P   E+
Sbjct: 639 PPVSSEQ 645


>At4g28760.1 68417.m04112 expressed protein predicted protein.
           Arabidopsis thaliana
          Length = 924

 Score = 28.3 bits (60), Expect = 3.5
 Identities = 20/67 (29%), Positives = 31/67 (46%), Gaps = 2/67 (2%)
 Frame = +2

Query: 59  TGLISSNPSVTPRLSLASNAHQKYQRTLRRLSSGRSPASPYPETVTGSSPAWRVSPV--L 232
           TG + S+  V+      +N   K +R   + SS    A+P P T+TG +    V P+  L
Sbjct: 579 TGSLKSSWKVSNLFFFKNNKASKEKRDASQCSSMSQLAAPSPVTLTGKTSEDCVFPIDCL 638

Query: 233 SPAKKEK 253
            P   E+
Sbjct: 639 PPVSSEQ 645


>At4g13410.1 68417.m02094 glycosyl transferase family 2 protein
           similar to beta-(1-3)-glucosyl transferase GB:AAC62210
           GI:3687658 from [Bradyrhizobium japonicum], cellulose
           synthase from Agrobacterium tumeficiens [gi:710492] and
           Agrobacterium radiobacter [gi:710493]; contains Pfam
           glycosyl transferase, group 2 family protein domain
           PF00535
          Length = 537

 Score = 27.9 bits (59), Expect = 4.6
 Identities = 15/41 (36%), Positives = 19/41 (46%), Gaps = 6/41 (14%)
 Frame = +2

Query: 338 KMKTTAVHN----FWTFFYLLFDF--LRSIYFREITIIFYC 442
           KM    +HN     W  FY+++ F  LR I     T  FYC
Sbjct: 353 KMTMEIIHNKRVKIWKKFYVIYSFFFLRKIVVHFFTYFFYC 393


>At5g35460.1 68418.m04217 expressed protein
          Length = 381

 Score = 27.5 bits (58), Expect = 6.1
 Identities = 13/36 (36%), Positives = 21/36 (58%), Gaps = 4/36 (11%)
 Frame = +2

Query: 368 WTFFYLLFDFLRSIYFR----EITIIFYCYFTNCKF 463
           + FFY++F  LR IY+R       ++ +CY+ N  F
Sbjct: 95  YCFFYVIFVPLRWIYYRFKKWHYYLLDFCYYANTIF 130


>At4g11745.1 68417.m01873 kelch repeat-containing protein similar to
           SKP1 interacting partner 6 [Arabidopsis thaliana]
           GI:10716957; contains Pfam profile PF01344: Kelch motif
          Length = 284

 Score = 27.1 bits (57), Expect = 8.0
 Identities = 16/47 (34%), Positives = 25/47 (53%), Gaps = 3/47 (6%)
 Frame = -1

Query: 296 NDLWIFTGQVLIVETFP---SSQVIRRG*PSTQVMSL*QSPGTGKRG 165
           N++ +  G++ +VE      SS +I+   P TQ+     SP TG RG
Sbjct: 69  NEVSVLDGKIYVVERCKVSVSSNLIQVFDPKTQIWECVASPSTGIRG 115


>At2g43900.1 68415.m05457 endonuclease/exonuclease/phosphatase
           family protein belongs to Pfam:PF03372:
           Endonuclease/Exonuclease/phosphatase family; contains 3
           WD-40 repeats (PF00400);similar to Type II
           inositol-1,4,5-trisphosphate 5-phosphatase EC 3.1.3.56
           (5PTASE) (INPP5B) (SP:P32019) [Homo sapiens]
          Length = 1305

 Score = 27.1 bits (57), Expect = 8.0
 Identities = 20/58 (34%), Positives = 29/58 (50%)
 Frame = +3

Query: 135 EHSVG*VLAVPPLPRTRRLSQAHHLRGGSAPSYHLRRRKSFDDQNLTCEDPEIVPHCG 308
           E ++  + +VPP PR    S +H LR      +H +R+ S DD     +  EIV  CG
Sbjct: 17  EEALSAMSSVPP-PRKIH-SYSHQLRATGQKGHHRQRQHSLDD---IPKITEIVSGCG 69


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,197,799
Number of Sequences: 28952
Number of extensions: 210511
Number of successful extensions: 690
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 665
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 688
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1003808112
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)