Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30668
         (714 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_0895 - 32804433-32804744,32804948-32805163,32805301-328056...    32   0.39 
01_05_0647 + 23910318-23910694,23911732-23911867,23912067-239122...    28   6.4  
01_01_0427 - 3245999-3246193,3246281-3246480,3246572-3246676,324...    28   6.4  
12_02_0189 + 15165485-15168694                                         28   8.5  

>01_06_0895 -
           32804433-32804744,32804948-32805163,32805301-32805642,
           32805778-32806020,32806130-32806582,32806898-32807113,
           32808360-32808432,32808750-32808790,32809027-32809118,
           32809222-32809333,32810003-32810078,32810154-32810301,
           32811195-32811336,32812120-32812196,32813568-32813619
          Length = 864

 Score = 32.3 bits (70), Expect = 0.39
 Identities = 28/95 (29%), Positives = 50/95 (52%), Gaps = 4/95 (4%)
 Frame = +2

Query: 212 SDNQLQNRADVQVMERSSNQTPRTKLRS----VPIRKALEVILVPLKSSFLVEGVSMQTL 379
           SDN ++N     +M     +T  T L S    +P+   ++V       SF++EG +++ +
Sbjct: 46  SDNDVRNIVLSYLMHNCFKETAETFLSSTGLELPVDYTVDVDKRKAIFSFVLEGNALKAI 105

Query: 380 WLMSEMS*NLLVLQNSVDQVGSGTLTLSAVELVQS 484
            L  E++ NL  L+N +D +    L+L  +ELV+S
Sbjct: 106 DLTEELAPNL--LENDMD-LHFDLLSLHFIELVRS 137


>01_05_0647 +
           23910318-23910694,23911732-23911867,23912067-23912277,
           23912357-23912724,23913793-23914081,23914173-23914372,
           23914452-23914646
          Length = 591

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 12/38 (31%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
 Frame = +1

Query: 172 RSLRRFD-VKEKQRKRQSATEQSRCPSNGAFVEPNTPY 282
           R +  FD   ++ +K++S +  S+CP     V P+ PY
Sbjct: 486 RPIGGFDKATQRSKKKKSDSNTSKCPVQAEVVTPSLPY 523


>01_01_0427 -
           3245999-3246193,3246281-3246480,3246572-3246676,
           3246968-3247052,3247958-3248325,3248405-3248639,
           3248807-3248968
          Length = 449

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 12/38 (31%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
 Frame = +1

Query: 172 RSLRRFD-VKEKQRKRQSATEQSRCPSNGAFVEPNTPY 282
           R +  FD   ++ +K++S +  S+CP     V P+ PY
Sbjct: 344 RPIGGFDKATQRSKKKKSDSNTSKCPVQAEVVTPSLPY 381


>12_02_0189 + 15165485-15168694
          Length = 1069

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 10/18 (55%), Positives = 15/18 (83%)
 Frame = +1

Query: 199  EKQRKRQSATEQSRCPSN 252
            E+QR+R+ A  +SRCPS+
Sbjct: 1038 ERQRRREKALAKSRCPSH 1055


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,070,968
Number of Sequences: 37544
Number of extensions: 292699
Number of successful extensions: 702
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 679
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 702
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1851002996
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)