Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30668
         (714 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_46510| Best HMM Match : Vicilin_N (HMM E-Value=1.4)                 32   0.53 
SB_10986| Best HMM Match : WD40 (HMM E-Value=0.026)                    31   0.70 
SB_2395| Best HMM Match : No HMM Matches (HMM E-Value=.)               31   1.2  
SB_21918| Best HMM Match : STT3 (HMM E-Value=0)                        30   1.6  
SB_5724| Best HMM Match : Vicilin_N (HMM E-Value=3)                    29   2.8  
SB_4001| Best HMM Match : Exo_endo_phos (HMM E-Value=0.0056)           29   4.9  
SB_44730| Best HMM Match : zf-C2H2 (HMM E-Value=0)                     29   4.9  

>SB_46510| Best HMM Match : Vicilin_N (HMM E-Value=1.4)
          Length = 157

 Score = 31.9 bits (69), Expect = 0.53
 Identities = 33/111 (29%), Positives = 46/111 (41%), Gaps = 1/111 (0%)
 Frame = +1

Query: 16  RTHHVSAGVIVRVGRRRSTLLQSNANRRFKRSGRLREYCVSNRNPAEDEFIIRSLRRFDV 195
           R    S+   VR G++ S     +  R  KR   L          AED  +    +R   
Sbjct: 46  RKRQTSSEYRVRKGQKDSECELDDEQRARKRQRNLETLNAQRAMMAEDS-LFAGRQRERT 104

Query: 196 KEKQRKRQSATEQSRCPSNG-AFVEPNTPYKVEIGTDKKSFGGDSRAVEVV 345
           +E+QR  +   +Q R PS   AFVE N   K++ G D    GG   A + V
Sbjct: 105 RERQRASRLRRKQQRQPSTTTAFVEKNN-NKIKRG-DAAVGGGSGGAKQFV 153


>SB_10986| Best HMM Match : WD40 (HMM E-Value=0.026)
          Length = 528

 Score = 31.5 bits (68), Expect = 0.70
 Identities = 15/58 (25%), Positives = 29/58 (50%)
 Frame = +1

Query: 58  RRRSTLLQSNANRRFKRSGRLREYCVSNRNPAEDEFIIRSLRRFDVKEKQRKRQSATE 231
           R +ST   S  N RF+ + +LR +C+    P+  +  I+   +F + +    R + T+
Sbjct: 284 RLQSTRFTSKNNSRFQATNKLRNHCLGYLCPSWRDLFIKKFGKFIIDQSFYNRLTPTQ 341


>SB_2395| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 218

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 19/56 (33%), Positives = 29/56 (51%)
 Frame = +1

Query: 106 RSGRLREYCVSNRNPAEDEFIIRSLRRFDVKEKQRKRQSATEQSRCPSNGAFVEPN 273
           R  R R  C+ N + A+ + I   L +   K K+ KR++ TEQ+   S G F + N
Sbjct: 59  RIARNRIICLQNDHKAKMKEIEEGLHKVHAKAKENKRENGTEQA---STGNFEKLN 111


>SB_21918| Best HMM Match : STT3 (HMM E-Value=0)
          Length = 520

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 14/53 (26%), Positives = 30/53 (56%)
 Frame = +2

Query: 236 ADVQVMERSSNQTPRTKLRSVPIRKALEVILVPLKSSFLVEGVSMQTLWLMSE 394
           A+++  +RSSN+T +    S PI+  +  +++ + + FL+   +    W+ SE
Sbjct: 358 ANLETSKRSSNKTAKKGDPSYPIKNEVATVMIGMMTLFLIT-YTFHCTWVTSE 409


>SB_5724| Best HMM Match : Vicilin_N (HMM E-Value=3)
          Length = 861

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 26/91 (28%), Positives = 37/91 (40%), Gaps = 1/91 (1%)
 Frame = +1

Query: 4   RSPKRTHHVSAGVIVRVGRRRSTLLQSNANRRFKRSGRLREYCVSNRNPAEDEFIIRSLR 183
           R     + +S    VR G++ S     +  R  KR   L          AED  +    +
Sbjct: 57  RQTSSEYRLSGKQRVRKGQKDSEYELDDEQRARKRQRNLETLNAQRAMMAEDS-LFAPRQ 115

Query: 184 RFDVKEKQRKRQSATEQSRCPSNG-AFVEPN 273
           R   +E+QR  +   +Q R PS   AFVE N
Sbjct: 116 RERARERQRASRLRRKQQRQPSTTTAFVEKN 146


>SB_4001| Best HMM Match : Exo_endo_phos (HMM E-Value=0.0056)
          Length = 508

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 21/61 (34%), Positives = 30/61 (49%)
 Frame = +1

Query: 58  RRRSTLLQSNANRRFKRSGRLREYCVSNRNPAEDEFIIRSLRRFDVKEKQRKRQSATEQS 237
           R +ST   S  N RF+ + +LR +C+S  N      I+     FD +E     Q +T QS
Sbjct: 7   RLQSTRFTSKNNSRFRATNKLRNHCLSYLN----SVILELGSPFDHEES----QDSTRQS 58

Query: 238 R 240
           R
Sbjct: 59  R 59


>SB_44730| Best HMM Match : zf-C2H2 (HMM E-Value=0)
          Length = 1346

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 15/54 (27%), Positives = 22/54 (40%)
 Frame = +1

Query: 94   RRFKRSGRLREYCVSNRNPAEDEFIIRSLRRFDVKEKQRKRQSATEQSRCPSNG 255
            + F RSG LR +C++     E  F+ +       +    KR   T     PS G
Sbjct: 1204 KSFNRSGDLRRHCMTVHEGKERAFVCKECSVKFTRAADLKRHCLTAHPTIPSQG 1257


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,832,048
Number of Sequences: 59808
Number of extensions: 336590
Number of successful extensions: 898
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 841
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 898
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1889780269
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)