Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30668
(714 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
X66975-1|CAA47386.1| 557|Homo sapiens nuclear ribonucleoprotein... 32 1.8
X65372-1|CAA46444.1| 557|Homo sapiens polypirimidine tract bin... 32 1.8
X65371-1|CAA46443.1| 550|Homo sapiens polypirimidine tract bin... 32 1.8
X62006-1|CAA43973.1| 531|Homo sapiens polypirimidine tract bin... 32 1.8
X60648-1|CAA43056.1| 531|Homo sapiens polypyrimidine tract-bind... 32 1.8
BT006819-1|AAP35465.1| 557|Homo sapiens polypyrimidine tract bi... 32 1.8
BC013694-1|AAH13694.1| 557|Homo sapiens polypyrimidine tract bi... 32 1.8
BC004383-1|AAH04383.1| 531|Homo sapiens polypyrimidine tract bi... 32 1.8
BC002397-1|AAH02397.1| 557|Homo sapiens polypyrimidine tract bi... 32 1.8
AC006273-1|AAC99798.1| 531|Homo sapiens PTB_HUMAN protein. 32 1.8
AB208910-1|BAD92147.1| 329|Homo sapiens polypyrimidine tract-bi... 32 1.8
>X66975-1|CAA47386.1| 557|Homo sapiens nuclear ribonucleoprotein
protein.
Length = 557
Score = 32.3 bits (70), Expect = 1.8
Identities = 17/44 (38%), Positives = 21/44 (47%)
Frame = +1
Query: 211 KRQSATEQSRCPSNGAFVEPNTPYKVEIGTDKKSFGGDSRAVEV 342
KR S S C +NG F+ + G D K F GDSR+ V
Sbjct: 13 KRGSDELFSTCVTNGPFIMSSNSASAANGNDSKKFKGDSRSAGV 56
>X65372-1|CAA46444.1| 557|Homo sapiens polypirimidine tract
binding protein protein.
Length = 557
Score = 32.3 bits (70), Expect = 1.8
Identities = 17/44 (38%), Positives = 21/44 (47%)
Frame = +1
Query: 211 KRQSATEQSRCPSNGAFVEPNTPYKVEIGTDKKSFGGDSRAVEV 342
KR S S C +NG F+ + G D K F GDSR+ V
Sbjct: 13 KRGSDELFSTCVTNGPFIMSSNSASAANGNDSKKFKGDSRSAGV 56
>X65371-1|CAA46443.1| 550|Homo sapiens polypirimidine tract
binding protein protein.
Length = 550
Score = 32.3 bits (70), Expect = 1.8
Identities = 17/44 (38%), Positives = 21/44 (47%)
Frame = +1
Query: 211 KRQSATEQSRCPSNGAFVEPNTPYKVEIGTDKKSFGGDSRAVEV 342
KR S S C +NG F+ + G D K F GDSR+ V
Sbjct: 13 KRGSDELFSTCVTNGPFIMSSNSASAANGNDSKKFKGDSRSAGV 56
>X62006-1|CAA43973.1| 531|Homo sapiens polypirimidine tract
binding protein protein.
Length = 531
Score = 32.3 bits (70), Expect = 1.8
Identities = 17/44 (38%), Positives = 21/44 (47%)
Frame = +1
Query: 211 KRQSATEQSRCPSNGAFVEPNTPYKVEIGTDKKSFGGDSRAVEV 342
KR S S C +NG F+ + G D K F GDSR+ V
Sbjct: 13 KRGSDELFSTCVTNGPFIMSSNSASAANGNDSKKFKGDSRSAGV 56
>X60648-1|CAA43056.1| 531|Homo sapiens polypyrimidine tract-binding
protein (pPTB) protein.
Length = 531
Score = 32.3 bits (70), Expect = 1.8
Identities = 17/44 (38%), Positives = 21/44 (47%)
Frame = +1
Query: 211 KRQSATEQSRCPSNGAFVEPNTPYKVEIGTDKKSFGGDSRAVEV 342
KR S S C +NG F+ + G D K F GDSR+ V
Sbjct: 13 KRGSDELFSTCVTNGPFIMSSNSASAANGNDSKKFKGDSRSAGV 56
>BT006819-1|AAP35465.1| 557|Homo sapiens polypyrimidine tract
binding protein 1 protein.
Length = 557
Score = 32.3 bits (70), Expect = 1.8
Identities = 17/44 (38%), Positives = 21/44 (47%)
Frame = +1
Query: 211 KRQSATEQSRCPSNGAFVEPNTPYKVEIGTDKKSFGGDSRAVEV 342
KR S S C +NG F+ + G D K F GDSR+ V
Sbjct: 13 KRGSDELFSTCVTNGPFIMSSNSASAANGNDSKKFKGDSRSAGV 56
>BC013694-1|AAH13694.1| 557|Homo sapiens polypyrimidine tract
binding protein 1 protein.
Length = 557
Score = 32.3 bits (70), Expect = 1.8
Identities = 17/44 (38%), Positives = 21/44 (47%)
Frame = +1
Query: 211 KRQSATEQSRCPSNGAFVEPNTPYKVEIGTDKKSFGGDSRAVEV 342
KR S S C +NG F+ + G D K F GDSR+ V
Sbjct: 13 KRGSDELFSTCVTNGPFIMSSNSASAANGNDSKKFKGDSRSAGV 56
>BC004383-1|AAH04383.1| 531|Homo sapiens polypyrimidine tract
binding protein 1 protein.
Length = 531
Score = 32.3 bits (70), Expect = 1.8
Identities = 17/44 (38%), Positives = 21/44 (47%)
Frame = +1
Query: 211 KRQSATEQSRCPSNGAFVEPNTPYKVEIGTDKKSFGGDSRAVEV 342
KR S S C +NG F+ + G D K F GDSR+ V
Sbjct: 13 KRGSDELFSTCVTNGPFIMSSNSASAANGNDSKKFKGDSRSAGV 56
>BC002397-1|AAH02397.1| 557|Homo sapiens polypyrimidine tract
binding protein 1 protein.
Length = 557
Score = 32.3 bits (70), Expect = 1.8
Identities = 17/44 (38%), Positives = 21/44 (47%)
Frame = +1
Query: 211 KRQSATEQSRCPSNGAFVEPNTPYKVEIGTDKKSFGGDSRAVEV 342
KR S S C +NG F+ + G D K F GDSR+ V
Sbjct: 13 KRGSDELFSTCVTNGPFIMSSNSASAANGNDSKKFKGDSRSAGV 56
>AC006273-1|AAC99798.1| 531|Homo sapiens PTB_HUMAN protein.
Length = 531
Score = 32.3 bits (70), Expect = 1.8
Identities = 17/44 (38%), Positives = 21/44 (47%)
Frame = +1
Query: 211 KRQSATEQSRCPSNGAFVEPNTPYKVEIGTDKKSFGGDSRAVEV 342
KR S S C +NG F+ + G D K F GDSR+ V
Sbjct: 13 KRGSDELFSTCVTNGPFIMSSNSASAANGNDSKKFKGDSRSAGV 56
>AB208910-1|BAD92147.1| 329|Homo sapiens polypyrimidine
tract-binding protein 1 isoform c variant protein.
Length = 329
Score = 32.3 bits (70), Expect = 1.8
Identities = 17/44 (38%), Positives = 21/44 (47%)
Frame = +1
Query: 211 KRQSATEQSRCPSNGAFVEPNTPYKVEIGTDKKSFGGDSRAVEV 342
KR S S C +NG F+ + G D K F GDSR+ V
Sbjct: 30 KRGSDELFSTCVTNGPFIMSSNSASAANGNDSKKFKGDSRSAGV 73
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 85,773,610
Number of Sequences: 237096
Number of extensions: 1585799
Number of successful extensions: 3226
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 3064
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3226
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 8343197486
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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