BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= wdS30668 (714 letters) Database: celegans 27,780 sequences; 12,740,198 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value U23179-2|AAK68207.1| 345|Caenorhabditis elegans Serpentine rece... 33 0.15 Z92777-11|CAB07168.2| 338|Caenorhabditis elegans Hypothetical p... 30 1.9 Z93374-5|CAB07557.1| 935|Caenorhabditis elegans Hypothetical pr... 29 3.3 AF101319-6|AAC69351.1| 314|Caenorhabditis elegans Hypothetical ... 29 4.4 Z70783-1|CAA94852.2| 765|Caenorhabditis elegans Hypothetical pr... 28 5.8 AL032639-5|CAA21629.1| 342|Caenorhabditis elegans Hypothetical ... 28 5.8 AL132859-5|CAB60490.2| 337|Caenorhabditis elegans Hypothetical ... 28 7.6 >U23179-2|AAK68207.1| 345|Caenorhabditis elegans Serpentine receptor, class b (beta)protein 5 protein. Length = 345 Score = 33.5 bits (73), Expect = 0.15 Identities = 16/48 (33%), Positives = 26/48 (54%) Frame = +3 Query: 549 VPEVVFYIILRFLNLP*ATPF*SLIITYLKKIFVNYFIEILNISYLCL 692 VP ++++++ R L LP L+ITY IF+ + + SY CL Sbjct: 36 VPSLLYFLLKRVLLLPFHGNLKCLLITYFSSIFLYALVLCFDFSYQCL 83 >Z92777-11|CAB07168.2| 338|Caenorhabditis elegans Hypothetical protein C17H1.4 protein. Length = 338 Score = 29.9 bits (64), Expect = 1.9 Identities = 19/87 (21%), Positives = 41/87 (47%) Frame = +1 Query: 58 RRRSTLLQSNANRRFKRSGRLREYCVSNRNPAEDEFIIRSLRRFDVKEKQRKRQSATEQS 237 RR L++SN + + R E + ++ E + R ++ ++ ++R++ +E Sbjct: 95 RREDELVKSNQKEQIEAMQRSDEALKNQKDADNKEILTREKIDQEMLKQTQERKNHSEDI 154 Query: 238 RCPSNGAFVEPNTPYKVEIGTDKKSFG 318 + A + NT ++ E +KK FG Sbjct: 155 ILANVKALKKENTRFQKESLNEKKQFG 181 >Z93374-5|CAB07557.1| 935|Caenorhabditis elegans Hypothetical protein C06C6.7 protein. Length = 935 Score = 29.1 bits (62), Expect = 3.3 Identities = 18/59 (30%), Positives = 30/59 (50%), Gaps = 3/59 (5%) Frame = +3 Query: 504 TIELDEKNEKINSEPVPEV---VFYIILRFLNLP*ATPF*SLIITYLKKIFVNYFIEIL 671 T+ L +K K S P+PE+ + + NLP AT I+T K ++ F++I+ Sbjct: 211 TLGLIDKIVKAESSPIPELKKQLAVLASAVTNLPPATTMKPFIVTLEKWALIDSFVDIM 269 >AF101319-6|AAC69351.1| 314|Caenorhabditis elegans Hypothetical protein K08D9.1 protein. Length = 314 Score = 28.7 bits (61), Expect = 4.4 Identities = 10/25 (40%), Positives = 18/25 (72%) Frame = +2 Query: 311 ALEVILVPLKSSFLVEGVSMQTLWL 385 A+ +++ PL S ++ E +S+QT WL Sbjct: 72 AIPILVTPLLSPYIQENISLQTGWL 96 >Z70783-1|CAA94852.2| 765|Caenorhabditis elegans Hypothetical protein ZK856.1 protein. Length = 765 Score = 28.3 bits (60), Expect = 5.8 Identities = 17/66 (25%), Positives = 31/66 (46%) Frame = +2 Query: 233 RADVQVMERSSNQTPRTKLRSVPIRKALEVILVPLKSSFLVEGVSMQTLWLMSEMS*NLL 412 + D RS +TP +R+V + K E+I + + LVE + + + E N++ Sbjct: 101 KIDESSRRRSVPETPEESIRTVMLEKWNEIIFMNISEQLLVEALRL----VKEERDGNII 156 Query: 413 VLQNSV 430 QN + Sbjct: 157 DAQNVI 162 >AL032639-5|CAA21629.1| 342|Caenorhabditis elegans Hypothetical protein Y38F1A.4 protein. Length = 342 Score = 28.3 bits (60), Expect = 5.8 Identities = 8/13 (61%), Positives = 9/13 (69%) Frame = +3 Query: 27 CICWCYCSRRPSP 65 C C+CYC RP P Sbjct: 275 CYCYCYCEPRPPP 287 >AL132859-5|CAB60490.2| 337|Caenorhabditis elegans Hypothetical protein Y39C12A.5 protein. Length = 337 Score = 27.9 bits (59), Expect = 7.6 Identities = 19/54 (35%), Positives = 30/54 (55%), Gaps = 1/54 (1%) Frame = +3 Query: 507 IELDEKNEKINSEPVPEVVFYIILRFLNLP*-ATPF*SLIITYLKKIFVNYFIE 665 +E+ K E+ S P YI L+F+ +TPF SL IT L+++ Y+I+ Sbjct: 69 LEIMGKVEEYESSNQP----YIFLQFVRTALISTPFHSLAITVLERLCATYYIK 118 Database: celegans Posted date: Oct 23, 2007 1:18 PM Number of letters in database: 12,740,198 Number of sequences in database: 27,780 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 14,049,048 Number of Sequences: 27780 Number of extensions: 263536 Number of successful extensions: 936 Number of sequences better than 10.0: 7 Number of HSP's better than 10.0 without gapping: 845 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 936 length of database: 12,740,198 effective HSP length: 79 effective length of database: 10,545,578 effective search space used: 1666201324 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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