Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30668
         (714 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U23179-2|AAK68207.1|  345|Caenorhabditis elegans Serpentine rece...    33   0.15 
Z92777-11|CAB07168.2|  338|Caenorhabditis elegans Hypothetical p...    30   1.9  
Z93374-5|CAB07557.1|  935|Caenorhabditis elegans Hypothetical pr...    29   3.3  
AF101319-6|AAC69351.1|  314|Caenorhabditis elegans Hypothetical ...    29   4.4  
Z70783-1|CAA94852.2|  765|Caenorhabditis elegans Hypothetical pr...    28   5.8  
AL032639-5|CAA21629.1|  342|Caenorhabditis elegans Hypothetical ...    28   5.8  
AL132859-5|CAB60490.2|  337|Caenorhabditis elegans Hypothetical ...    28   7.6  

>U23179-2|AAK68207.1|  345|Caenorhabditis elegans Serpentine
           receptor, class b (beta)protein 5 protein.
          Length = 345

 Score = 33.5 bits (73), Expect = 0.15
 Identities = 16/48 (33%), Positives = 26/48 (54%)
 Frame = +3

Query: 549 VPEVVFYIILRFLNLP*ATPF*SLIITYLKKIFVNYFIEILNISYLCL 692
           VP ++++++ R L LP       L+ITY   IF+   +   + SY CL
Sbjct: 36  VPSLLYFLLKRVLLLPFHGNLKCLLITYFSSIFLYALVLCFDFSYQCL 83


>Z92777-11|CAB07168.2|  338|Caenorhabditis elegans Hypothetical
           protein C17H1.4 protein.
          Length = 338

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 19/87 (21%), Positives = 41/87 (47%)
 Frame = +1

Query: 58  RRRSTLLQSNANRRFKRSGRLREYCVSNRNPAEDEFIIRSLRRFDVKEKQRKRQSATEQS 237
           RR   L++SN   + +   R  E   + ++    E + R     ++ ++ ++R++ +E  
Sbjct: 95  RREDELVKSNQKEQIEAMQRSDEALKNQKDADNKEILTREKIDQEMLKQTQERKNHSEDI 154

Query: 238 RCPSNGAFVEPNTPYKVEIGTDKKSFG 318
              +  A  + NT ++ E   +KK FG
Sbjct: 155 ILANVKALKKENTRFQKESLNEKKQFG 181


>Z93374-5|CAB07557.1|  935|Caenorhabditis elegans Hypothetical
           protein C06C6.7 protein.
          Length = 935

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 18/59 (30%), Positives = 30/59 (50%), Gaps = 3/59 (5%)
 Frame = +3

Query: 504 TIELDEKNEKINSEPVPEV---VFYIILRFLNLP*ATPF*SLIITYLKKIFVNYFIEIL 671
           T+ L +K  K  S P+PE+   +  +     NLP AT     I+T  K   ++ F++I+
Sbjct: 211 TLGLIDKIVKAESSPIPELKKQLAVLASAVTNLPPATTMKPFIVTLEKWALIDSFVDIM 269


>AF101319-6|AAC69351.1|  314|Caenorhabditis elegans Hypothetical
           protein K08D9.1 protein.
          Length = 314

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 10/25 (40%), Positives = 18/25 (72%)
 Frame = +2

Query: 311 ALEVILVPLKSSFLVEGVSMQTLWL 385
           A+ +++ PL S ++ E +S+QT WL
Sbjct: 72  AIPILVTPLLSPYIQENISLQTGWL 96


>Z70783-1|CAA94852.2|  765|Caenorhabditis elegans Hypothetical
           protein ZK856.1 protein.
          Length = 765

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 17/66 (25%), Positives = 31/66 (46%)
 Frame = +2

Query: 233 RADVQVMERSSNQTPRTKLRSVPIRKALEVILVPLKSSFLVEGVSMQTLWLMSEMS*NLL 412
           + D     RS  +TP   +R+V + K  E+I + +    LVE + +    +  E   N++
Sbjct: 101 KIDESSRRRSVPETPEESIRTVMLEKWNEIIFMNISEQLLVEALRL----VKEERDGNII 156

Query: 413 VLQNSV 430
             QN +
Sbjct: 157 DAQNVI 162


>AL032639-5|CAA21629.1|  342|Caenorhabditis elegans Hypothetical
           protein Y38F1A.4 protein.
          Length = 342

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 8/13 (61%), Positives = 9/13 (69%)
 Frame = +3

Query: 27  CICWCYCSRRPSP 65
           C C+CYC  RP P
Sbjct: 275 CYCYCYCEPRPPP 287


>AL132859-5|CAB60490.2|  337|Caenorhabditis elegans Hypothetical
           protein Y39C12A.5 protein.
          Length = 337

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 19/54 (35%), Positives = 30/54 (55%), Gaps = 1/54 (1%)
 Frame = +3

Query: 507 IELDEKNEKINSEPVPEVVFYIILRFLNLP*-ATPF*SLIITYLKKIFVNYFIE 665
           +E+  K E+  S   P    YI L+F+     +TPF SL IT L+++   Y+I+
Sbjct: 69  LEIMGKVEEYESSNQP----YIFLQFVRTALISTPFHSLAITVLERLCATYYIK 118


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,049,048
Number of Sequences: 27780
Number of extensions: 263536
Number of successful extensions: 936
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 845
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 936
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1666201324
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)