Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30668
         (714 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY263366-1|AAO92605.1|  139|Apis mellifera octopamine receptor p...    24   1.6  
AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    24   1.6  
DQ325067-1|ABD14081.1|  152|Apis mellifera complementary sex det...    22   5.0  
DQ325066-1|ABD14080.1|  152|Apis mellifera complementary sex det...    22   5.0  
DQ325065-1|ABD14079.1|  152|Apis mellifera complementary sex det...    22   5.0  
DQ325064-1|ABD14078.1|  152|Apis mellifera complementary sex det...    22   5.0  
DQ325063-1|ABD14077.1|  152|Apis mellifera complementary sex det...    22   5.0  
DQ325062-1|ABD14076.1|  152|Apis mellifera complementary sex det...    22   5.0  
DQ325061-1|ABD14075.1|  152|Apis mellifera complementary sex det...    22   5.0  
AY569721-1|AAS86674.1|  400|Apis mellifera complementary sex det...    22   5.0  
AY569719-1|AAS86672.1|  401|Apis mellifera feminizer protein.          22   5.0  
AY569718-1|AAS86671.1|  401|Apis mellifera feminizer protein.          22   5.0  
AY569715-1|AAS86668.1|  401|Apis mellifera feminizer protein.          22   5.0  
AY569714-1|AAS86667.1|  401|Apis mellifera feminizer protein.          22   5.0  
AY569713-1|AAS86666.1|  401|Apis mellifera feminizer protein.          22   5.0  
AY569711-1|AAS86664.1|  401|Apis mellifera feminizer protein.          22   5.0  
AY569702-1|AAS86655.1|  400|Apis mellifera feminizer protein.          22   5.0  
AY350616-1|AAQ57658.1|  401|Apis mellifera complementary sex det...    22   5.0  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       22   6.6  
M29488-1|AAA27723.1|   86|Apis mellifera protein ( Bee homeobox-...    21   8.8  
DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholi...    21   8.8  
AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamat...    21   8.8  
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    21   8.8  
AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamat...    21   8.8  

>AY263366-1|AAO92605.1|  139|Apis mellifera octopamine receptor
           protein.
          Length = 139

 Score = 23.8 bits (49), Expect = 1.6
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = +3

Query: 15  AHASCICWCYCSRRPSPL 68
           A  S IC C+C RR + L
Sbjct: 72  AFKSIICKCFCKRRTNTL 89


>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 23.8 bits (49), Expect = 1.6
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = +3

Query: 15  AHASCICWCYCSRRPSPL 68
           A  S IC C+C RR + L
Sbjct: 520 AFKSIICKCFCKRRTNTL 537


>DQ325067-1|ABD14081.1|  152|Apis mellifera complementary sex
           determiner protein.
          Length = 152

 Score = 22.2 bits (45), Expect = 5.0
 Identities = 10/37 (27%), Positives = 17/37 (45%)
 Frame = +1

Query: 49  RVGRRRSTLLQSNANRRFKRSGRLREYCVSNRNPAED 159
           R  RRR +  +    + +K     REY  ++R  + D
Sbjct: 33  RTSRRRYSRSREREQKSYKNEREYREYRETSRERSRD 69


>DQ325066-1|ABD14080.1|  152|Apis mellifera complementary sex
           determiner protein.
          Length = 152

 Score = 22.2 bits (45), Expect = 5.0
 Identities = 10/37 (27%), Positives = 17/37 (45%)
 Frame = +1

Query: 49  RVGRRRSTLLQSNANRRFKRSGRLREYCVSNRNPAED 159
           R  RRR +  +    + +K     REY  ++R  + D
Sbjct: 33  RTSRRRYSRSREREQKSYKNEREYREYRETSRERSRD 69


>DQ325065-1|ABD14079.1|  152|Apis mellifera complementary sex
           determiner protein.
          Length = 152

 Score = 22.2 bits (45), Expect = 5.0
 Identities = 10/37 (27%), Positives = 17/37 (45%)
 Frame = +1

Query: 49  RVGRRRSTLLQSNANRRFKRSGRLREYCVSNRNPAED 159
           R  RRR +  +    + +K     REY  ++R  + D
Sbjct: 33  RTSRRRYSRSREREQKSYKNEREYREYRETSRERSRD 69


>DQ325064-1|ABD14078.1|  152|Apis mellifera complementary sex
           determiner protein.
          Length = 152

 Score = 22.2 bits (45), Expect = 5.0
 Identities = 10/37 (27%), Positives = 17/37 (45%)
 Frame = +1

Query: 49  RVGRRRSTLLQSNANRRFKRSGRLREYCVSNRNPAED 159
           R  RRR +  +    + +K     REY  ++R  + D
Sbjct: 33  RTSRRRYSRSREREQKSYKNEREYREYRETSRERSRD 69


>DQ325063-1|ABD14077.1|  152|Apis mellifera complementary sex
           determiner protein.
          Length = 152

 Score = 22.2 bits (45), Expect = 5.0
 Identities = 10/37 (27%), Positives = 17/37 (45%)
 Frame = +1

Query: 49  RVGRRRSTLLQSNANRRFKRSGRLREYCVSNRNPAED 159
           R  RRR +  +    + +K     REY  ++R  + D
Sbjct: 33  RTSRRRYSRSREREQKSYKNEREYREYRETSRERSRD 69


>DQ325062-1|ABD14076.1|  152|Apis mellifera complementary sex
           determiner protein.
          Length = 152

 Score = 22.2 bits (45), Expect = 5.0
 Identities = 10/37 (27%), Positives = 17/37 (45%)
 Frame = +1

Query: 49  RVGRRRSTLLQSNANRRFKRSGRLREYCVSNRNPAED 159
           R  RRR +  +    + +K     REY  ++R  + D
Sbjct: 33  RTSRRRYSRSREREQKSYKNEREYREYRETSRERSRD 69


>DQ325061-1|ABD14075.1|  152|Apis mellifera complementary sex
           determiner protein.
          Length = 152

 Score = 22.2 bits (45), Expect = 5.0
 Identities = 10/37 (27%), Positives = 17/37 (45%)
 Frame = +1

Query: 49  RVGRRRSTLLQSNANRRFKRSGRLREYCVSNRNPAED 159
           R  RRR +  +    + +K     REY  ++R  + D
Sbjct: 33  RTSRRRYSRSREREQKSYKNEREYREYRETSRERSRD 69


>AY569721-1|AAS86674.1|  400|Apis mellifera complementary sex
           determiner protein.
          Length = 400

 Score = 22.2 bits (45), Expect = 5.0
 Identities = 13/29 (44%), Positives = 16/29 (55%)
 Frame = +2

Query: 590 SSLSYAILVFNNYLFKKNICKLFY*NIKH 676
           SSLS +    NNY    N  KL+Y NI +
Sbjct: 305 SSLSNSCNYSNNYYNNNNYKKLYY-NINY 332


>AY569719-1|AAS86672.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 22.2 bits (45), Expect = 5.0
 Identities = 10/37 (27%), Positives = 17/37 (45%)
 Frame = +1

Query: 49  RVGRRRSTLLQSNANRRFKRSGRLREYCVSNRNPAED 159
           R  RRR +  +    + +K     REY  ++R  + D
Sbjct: 282 RTSRRRYSRSREREQKSYKNEREYREYRETSRERSRD 318


>AY569718-1|AAS86671.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 22.2 bits (45), Expect = 5.0
 Identities = 10/37 (27%), Positives = 17/37 (45%)
 Frame = +1

Query: 49  RVGRRRSTLLQSNANRRFKRSGRLREYCVSNRNPAED 159
           R  RRR +  +    + +K     REY  ++R  + D
Sbjct: 282 RTSRRRYSRSREREQKSYKNEREYREYRETSRERSRD 318


>AY569715-1|AAS86668.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 22.2 bits (45), Expect = 5.0
 Identities = 10/37 (27%), Positives = 17/37 (45%)
 Frame = +1

Query: 49  RVGRRRSTLLQSNANRRFKRSGRLREYCVSNRNPAED 159
           R  RRR +  +    + +K     REY  ++R  + D
Sbjct: 282 RTSRRRYSRSREREQKSYKNEREYREYRETSRERSRD 318


>AY569714-1|AAS86667.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 22.2 bits (45), Expect = 5.0
 Identities = 10/37 (27%), Positives = 17/37 (45%)
 Frame = +1

Query: 49  RVGRRRSTLLQSNANRRFKRSGRLREYCVSNRNPAED 159
           R  RRR +  +    + +K     REY  ++R  + D
Sbjct: 282 RTSRRRYSRSREREQKSYKNEREYREYRETSRERSRD 318


>AY569713-1|AAS86666.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 22.2 bits (45), Expect = 5.0
 Identities = 10/37 (27%), Positives = 17/37 (45%)
 Frame = +1

Query: 49  RVGRRRSTLLQSNANRRFKRSGRLREYCVSNRNPAED 159
           R  RRR +  +    + +K     REY  ++R  + D
Sbjct: 282 RTSRRRYSRSREREQKSYKNEREYREYRETSRERSRD 318


>AY569711-1|AAS86664.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 22.2 bits (45), Expect = 5.0
 Identities = 10/37 (27%), Positives = 17/37 (45%)
 Frame = +1

Query: 49  RVGRRRSTLLQSNANRRFKRSGRLREYCVSNRNPAED 159
           R  RRR +  +    + +K     REY  ++R  + D
Sbjct: 282 RTSRRRYSRSREREQKSYKNEREYREYRETSRERSRD 318


>AY569702-1|AAS86655.1|  400|Apis mellifera feminizer protein.
          Length = 400

 Score = 22.2 bits (45), Expect = 5.0
 Identities = 10/37 (27%), Positives = 17/37 (45%)
 Frame = +1

Query: 49  RVGRRRSTLLQSNANRRFKRSGRLREYCVSNRNPAED 159
           R  RRR +  +    + +K     REY  ++R  + D
Sbjct: 281 RTSRRRYSRSREREQKSYKNEREYREYRETSRERSRD 317


>AY350616-1|AAQ57658.1|  401|Apis mellifera complementary sex
           determiner protein.
          Length = 401

 Score = 22.2 bits (45), Expect = 5.0
 Identities = 10/37 (27%), Positives = 17/37 (45%)
 Frame = +1

Query: 49  RVGRRRSTLLQSNANRRFKRSGRLREYCVSNRNPAED 159
           R  RRR +  +    + +K     REY  ++R  + D
Sbjct: 282 RTSRRRYSRSREREQKSYKNEREYREYRETSRERSRD 318


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 21.8 bits (44), Expect = 6.6
 Identities = 9/18 (50%), Positives = 14/18 (77%)
 Frame = +1

Query: 205 QRKRQSATEQSRCPSNGA 258
           Q+K+   T+QS+ PS+GA
Sbjct: 3   QQKQPIITQQSQQPSSGA 20


>M29488-1|AAA27723.1|   86|Apis mellifera protein ( Bee
           homeobox-containing gene,partial cds, clone H55. ).
          Length = 86

 Score = 21.4 bits (43), Expect = 8.8
 Identities = 11/37 (29%), Positives = 18/37 (48%)
 Frame = -2

Query: 167 INSSSAGLRLETQYSRSRPERLNRLFAFDCSSVERRR 57
           +N++    R  T Y+R +   L + F F+     RRR
Sbjct: 2   VNANGEVKRQRTSYTRYQTLELEKEFHFNRYLTRRRR 38


>DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholine
           receptor alpha1subunit protein.
          Length = 601

 Score = 21.4 bits (43), Expect = 8.8
 Identities = 8/13 (61%), Positives = 10/13 (76%)
 Frame = +3

Query: 543 EPVPEVVFYIILR 581
           EP P++VF I LR
Sbjct: 221 EPYPDIVFNITLR 233


>AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamate
           receptor 1 protein.
          Length = 843

 Score = 21.4 bits (43), Expect = 8.8
 Identities = 8/19 (42%), Positives = 10/19 (52%)
 Frame = +1

Query: 427 CGPGRERDPDTLGCRASAV 483
           CGPG+    D  GC   A+
Sbjct: 488 CGPGKWPHEDKRGCYQLAI 506


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 21.4 bits (43), Expect = 8.8
 Identities = 12/44 (27%), Positives = 19/44 (43%)
 Frame = -1

Query: 480 CTSSTAESVRVPLPTWSTLFCSTNKF*LISLISQSVCIETPSTR 349
           C S+T  + R P  +   L C+T+ +      + SV   T   R
Sbjct: 751 CASTTTITARSPQGSQGLLQCATSNYSTTRWPATSVITTTTGAR 794


>AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 933

 Score = 21.4 bits (43), Expect = 8.8
 Identities = 8/19 (42%), Positives = 10/19 (52%)
 Frame = +1

Query: 427 CGPGRERDPDTLGCRASAV 483
           CGPG+    D  GC   A+
Sbjct: 578 CGPGKWPHEDKRGCYQLAI 596


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 172,972
Number of Sequences: 438
Number of extensions: 3735
Number of successful extensions: 26
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 26
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 26
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22048515
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)