Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30668
         (714 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g34770.2 68414.m04328 MAGE-8 antigen-related contains weak si...    30   1.8  
At1g34770.1 68414.m04327 MAGE-8 antigen-related contains weak si...    30   1.8  
At3g63500.2 68416.m07153 expressed protein                             29   3.1  
At3g63500.1 68416.m07152 expressed protein                             29   3.1  
At1g64880.1 68414.m07355 ribosomal protein S5 family protein con...    29   4.0  
At1g63300.1 68414.m07156 expressed protein similar to Intracellu...    29   4.0  
At3g28715.1 68416.m03584 H+-transporting two-sector ATPase, puta...    28   5.3  
At3g28710.1 68416.m03583 H+-transporting two-sector ATPase, puta...    28   5.3  
At3g45130.1 68416.m04871 cycloartenol synthase, putative / 2,3-e...    28   7.1  
At1g30280.1 68414.m03703 expressed protein contains low similari...    28   7.1  
At1g05490.1 68414.m00559 C protein immunoglobulin-A-binding beta...    28   7.1  
At5g48160.1 68418.m05949 tropomyosin-related contains weak simil...    27   9.3  
At1g69480.1 68414.m07983 EXS family protein / ERD1/XPR1/SYG1 fam...    27   9.3  
At1g34430.1 68414.m04277 dihydrolipoamide S-acetyltransferase, p...    27   9.3  

>At1g34770.2 68414.m04328 MAGE-8 antigen-related contains weak
           similarity to Swiss-Prot:P43361 melanoma-associated
           antigen 8 (MAGE-8 antigen) [Homo sapiens]
          Length = 237

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 13/27 (48%), Positives = 19/27 (70%)
 Frame = +1

Query: 187 FDVKEKQRKRQSATEQSRCPSNGAFVE 267
           +D+KE QR R S+T QSR P + + V+
Sbjct: 77  YDLKELQRARSSSTGQSRLPQSQSSVD 103


>At1g34770.1 68414.m04327 MAGE-8 antigen-related contains weak
           similarity to Swiss-Prot:P43361 melanoma-associated
           antigen 8 (MAGE-8 antigen) [Homo sapiens]
          Length = 191

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 13/27 (48%), Positives = 19/27 (70%)
 Frame = +1

Query: 187 FDVKEKQRKRQSATEQSRCPSNGAFVE 267
           +D+KE QR R S+T QSR P + + V+
Sbjct: 77  YDLKELQRARSSSTGQSRLPQSQSSVD 103


>At3g63500.2 68416.m07153 expressed protein
          Length = 1162

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 18/77 (23%), Positives = 35/77 (45%), Gaps = 2/77 (2%)
 Frame = +1

Query: 7    SPKRTHHVSAGVIVRVGRRRSTLLQSNANRRFKRSGRLREYCVSNRNPAEDEFIIR--SL 180
            SPK         IVR+ +  + + Q  A+   + +  L+   ++ +   E+E+  R   L
Sbjct: 1050 SPKEPRFEELESIVRMKQAEAEMFQGRADDARREAEGLKRIAIAKKEKIEEEYNRRMGKL 1109

Query: 181  RRFDVKEKQRKRQSATE 231
               D +E++R+R    E
Sbjct: 1110 SMEDAQERRRRRYEELE 1126


>At3g63500.1 68416.m07152 expressed protein
          Length = 887

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 18/77 (23%), Positives = 35/77 (45%), Gaps = 2/77 (2%)
 Frame = +1

Query: 7    SPKRTHHVSAGVIVRVGRRRSTLLQSNANRRFKRSGRLREYCVSNRNPAEDEFIIR--SL 180
            SPK         IVR+ +  + + Q  A+   + +  L+   ++ +   E+E+  R   L
Sbjct: 775  SPKEPRFEELESIVRMKQAEAEMFQGRADDARREAEGLKRIAIAKKEKIEEEYNRRMGKL 834

Query: 181  RRFDVKEKQRKRQSATE 231
               D +E++R+R    E
Sbjct: 835  SMEDAQERRRRRYEELE 851


>At1g64880.1 68414.m07355 ribosomal protein S5 family protein
           contains similarity to 30S ribosomal protein S5
           GI:6969105 from [Campylobacter jejuni]
          Length = 515

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 15/42 (35%), Positives = 23/42 (54%)
 Frame = +1

Query: 109 SGRLREYCVSNRNPAEDEFIIRSLRRFDVKEKQRKRQSATEQ 234
           S R R +  S  +P+E + ++R L     KEKQR+R+    Q
Sbjct: 60  SQRYRFFSSSTMSPSEADRVVRELIAEVEKEKQREREERQRQ 101


>At1g63300.1 68414.m07156 expressed protein similar to Intracellular
           protein transport protein USO1 (Swiss-Prot:P25386)
           [Saccharomyces cerevisiae]; similar to Myosin II heavy
           chain, non muscle (Swiss-Prot:P08799) [Dictyostelium
           discoideum]
          Length = 1029

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = +1

Query: 208 RKRQSATEQSRCPSNGAFVEPNTPYKV 288
           R+R S    S   S+G+ +EPNTP +V
Sbjct: 199 RRRASIESDSTMSSSGSVIEPNTPEEV 225


>At3g28715.1 68416.m03584 H+-transporting two-sector ATPase,
           putative similar to SP|P54641 Vacuolar ATP synthase
           subunit d (EC 3.6.3.14) (Vacuolar proton pump d subunit)
           (V-ATPase 41 KDa accessory protein) {Dictyostelium
           discoideum}; contains Pfam profile PF01992: ATP synthase
           (C/AC39) subunit
          Length = 351

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 12/31 (38%), Positives = 15/31 (48%)
 Frame = +3

Query: 42  YCSRRPSPLHTTTVKRKQAI*TFGPTSRILC 134
           Y    PSPLHTTT+  K  +        +LC
Sbjct: 57  YLQNEPSPLHTTTIVEKCTLKLVDDYKHMLC 87


>At3g28710.1 68416.m03583 H+-transporting two-sector ATPase,
           putative similar to SP|P54641 Vacuolar ATP synthase
           subunit d (EC 3.6.3.14) (Vacuolar proton pump d subunit)
           (V-ATPase 41 KDa accessory protein) {Dictyostelium
           discoideum}; contains Pfam profile PF01992: ATP synthase
           (C/AC39) subunit
          Length = 351

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 12/31 (38%), Positives = 15/31 (48%)
 Frame = +3

Query: 42  YCSRRPSPLHTTTVKRKQAI*TFGPTSRILC 134
           Y    PSPLHTTT+  K  +        +LC
Sbjct: 57  YLQNEPSPLHTTTIVEKCTLKLVDDYKHMLC 87


>At3g45130.1 68416.m04871 cycloartenol synthase, putative /
           2,3-epoxysqualene--cycloartenol cyclase, putative /
           (S)-2,3-epoxysqualene mutase, putative 77% similar to
           cycloartenol synthase [SP|P38605|gi:452446] [PMID:
           7505443]; oxidosqualene cyclase  LcOSC2 - Luffa
           cylindrica, EMBL:AB033335
          Length = 748

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 12/36 (33%), Positives = 22/36 (61%)
 Frame = +3

Query: 486 GIERIPTIELDEKNEKINSEPVPEVVFYIILRFLNL 593
           G+ER+P +++ E  E++ +E V  V     LRF ++
Sbjct: 71  GMERLPQVKVKEGEERLINEEVVNVTLRRSLRFYSI 106


>At1g30280.1 68414.m03703 expressed protein contains low similarity
           to cyclin G-associated kinase GI:1902912 SP|P97874 from
           [Rattus norvegicus]
          Length = 455

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 21/61 (34%), Positives = 29/61 (47%), Gaps = 3/61 (4%)
 Frame = +1

Query: 178 LRRFDVKEKQRKRQSATEQ-SRCP-SNGAFV-EPNTPYKVEIGTDKKSFGGDSRAVEVVI 348
           LR  +V  +  KR+S  +  S  P +  +F  + NTP K +    K  FGG  RA    I
Sbjct: 160 LRPLNVPSRSHKRESKKQSFSAVPKAKDSFSGQNNTPEKADFYYKKTHFGGSRRASPETI 219

Query: 349 S 351
           S
Sbjct: 220 S 220


>At1g05490.1 68414.m00559 C protein immunoglobulin-A-binding beta
           antigen-related contains weak similarity to C protein
           immunoglobulin-A-binding beta antigen [Streptococcus
           agalactiae] gi|18028989|gb|AAL56250
          Length = 731

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 19/64 (29%), Positives = 34/64 (53%)
 Frame = +1

Query: 61  RRSTLLQSNANRRFKRSGRLREYCVSNRNPAEDEFIIRSLRRFDVKEKQRKRQSATEQSR 240
           +R +L++  A  R+KRSG       S   P E +  I+ L   + ++K+R+R+     ++
Sbjct: 329 KRVSLVERKALVRYKRSGS------SLTKPRERDNKIQKLNHREEEKKERQREVVRVVTK 382

Query: 241 CPSN 252
            PSN
Sbjct: 383 QPSN 386


>At5g48160.1 68418.m05949 tropomyosin-related contains weak
           similarity to Tropomyosin, muscle (Allergen Ani s 3).
           (Swiss-Prot:Q9NAS5) [Anisakis simplex]
          Length = 574

 Score = 27.5 bits (58), Expect = 9.3
 Identities = 15/70 (21%), Positives = 36/70 (51%)
 Frame = +1

Query: 43  IVRVGRRRSTLLQSNANRRFKRSGRLREYCVSNRNPAEDEFIIRSLRRFDVKEKQRKRQS 222
           IVR+ +  + + Q  AN   + + RL+   ++  + +E+E+    L++  + E + ++Q 
Sbjct: 456 IVRLKQAEADMFQLKANEAKREADRLQRIVLAKMDKSEEEYASNYLKQ-RLSEAEAEKQY 514

Query: 223 ATEQSRCPSN 252
             E+ +   N
Sbjct: 515 LFEKIKLQEN 524


>At1g69480.1 68414.m07983 EXS family protein / ERD1/XPR1/SYG1 family
           protein similar to  PHO1 protein [Arabidopsis thaliana]
           GI:20069032; contains Pfam profiles PF03105: SPX domain,
           PF03124: EXS family
          Length = 777

 Score = 27.5 bits (58), Expect = 9.3
 Identities = 11/19 (57%), Positives = 14/19 (73%)
 Frame = -2

Query: 305 LSVPISTLYGVFGSTNAPL 249
           L  PI+TL GVFG +N P+
Sbjct: 246 LESPITTLKGVFGDSNEPI 264


>At1g34430.1 68414.m04277 dihydrolipoamide S-acetyltransferase,
           putative similar to dihydrolipoamide S-acetyltransferase
           (LTA2) [Arabidopsis thaliana] GI:5881963; contains Pfam
           profiles PF00198: 2-oxo acid dehydrogenases
           acyltransferase (catalytic domain), PF00364:
           Biotin-requiring enzyme, PF02817: e3 binding domain
          Length = 465

 Score = 27.5 bits (58), Expect = 9.3
 Identities = 17/46 (36%), Positives = 24/46 (52%)
 Frame = +2

Query: 257 RSSNQTPRTKLRSVPIRKALEVILVPLKSSFLVEGVSMQTLWLMSE 394
           RSS    R K R +PI+  +  I +P  SS + EG  +   W+ SE
Sbjct: 20  RSSVTGFRVKPRIIPIQAKIREIFMPALSSTMTEGKIVS--WVKSE 63


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,139,256
Number of Sequences: 28952
Number of extensions: 241197
Number of successful extensions: 684
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 673
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 684
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1545769616
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)