Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30666
(477 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_01_0376 - 2934115-2934603 29 1.5
06_03_0279 + 19100499-19100927 28 3.4
06_01_1061 + 8562039-8562485 28 3.4
11_06_0172 - 20877029-20878049,20880129-20880400 28 4.5
10_07_0044 + 12319382-12319532,12319978-12320163,12320247-123203... 28 4.5
07_03_1093 + 23912303-23912467,23912671-23912801,23913079-239130... 28 4.5
06_03_1030 - 27014654-27014817,27015082-27015121,27015885-27016244 27 5.9
04_03_0282 - 13874547-13874738,13875047-13875134,13875222-138753... 27 5.9
04_01_0285 - 3794628-3794801,3794935-3795090,3795232-3795729 27 5.9
04_04_0548 + 26172595-26173189,26173346-26173473,26173606-261738... 27 7.8
>12_01_0376 - 2934115-2934603
Length = 162
Score = 29.5 bits (63), Expect = 1.5
Identities = 18/40 (45%), Positives = 22/40 (55%)
Frame = -1
Query: 306 NPLCLSALYSTVLMVPSARADCTRPSQRHRHGSRAGTCCR 187
+PL A Y+ + M PSAR D P +RHR R G CR
Sbjct: 112 HPLVKHAAYAYLQMTPSARDD---PGRRHRRRWR-GPLCR 147
>06_03_0279 + 19100499-19100927
Length = 142
Score = 28.3 bits (60), Expect = 3.4
Identities = 15/47 (31%), Positives = 24/47 (51%), Gaps = 4/47 (8%)
Frame = -1
Query: 348 QHGEHDPRVSTTALNPLCLSALYSTVLM----VPSARADCTRPSQRH 220
+ E + AL+ LCLS+ ++ L+ R + TRPS+RH
Sbjct: 55 ERAEEEKPSPLNALSHLCLSSSFAPPLLSFSRADGGRGEATRPSRRH 101
>06_01_1061 + 8562039-8562485
Length = 148
Score = 28.3 bits (60), Expect = 3.4
Identities = 19/44 (43%), Positives = 20/44 (45%)
Frame = -1
Query: 222 HRHGSRAGTCCRRCEDPLLCTQRRI*DERDSRRGGRHVRDDVHD 91
HR GS G R PL C + E SR GGR R DV D
Sbjct: 24 HRWGSVEGEARPRATLPLRCRRWWWRSEPTSRGGGRGGRRDVGD 67
>11_06_0172 - 20877029-20878049,20880129-20880400
Length = 430
Score = 27.9 bits (59), Expect = 4.5
Identities = 15/45 (33%), Positives = 22/45 (48%)
Frame = -1
Query: 249 ADCTRPSQRHRHGSRAGTCCRRCEDPLLCTQRRI*DERDSRRGGR 115
A C + R++ G R+ CC R +D + R+ DER R R
Sbjct: 30 AGCRIAAARNQEGCRSHGCCHRLQDER--RRHRLQDERRRRLSAR 72
>10_07_0044 +
12319382-12319532,12319978-12320163,12320247-12320396,
12320495-12320644,12320728-12321417,12321641-12322033,
12322073-12322546,12322634-12323974,12324042-12324388
Length = 1293
Score = 27.9 bits (59), Expect = 4.5
Identities = 18/64 (28%), Positives = 25/64 (39%), Gaps = 3/64 (4%)
Frame = -1
Query: 369 DDDDLQVQHGEHDPRVSTTALNPLCLSALYSTV---LMVPSARADCTRPSQRHRHGSRAG 199
DDDD ++ + D S T+ P +YS + V A DC + G
Sbjct: 444 DDDDDEMVQSDDDDTQSPTSSVPDPFDCVYSNIPQSTNVLKAEPDCKHCGAKRFQYEPPG 503
Query: 198 TCCR 187
CCR
Sbjct: 504 FCCR 507
>07_03_1093 +
23912303-23912467,23912671-23912801,23913079-23913087,
23913146-23913228,23914494-23914596,23915988-23916066,
23916174-23916274,23916371-23916479
Length = 259
Score = 27.9 bits (59), Expect = 4.5
Identities = 13/27 (48%), Positives = 15/27 (55%)
Frame = +2
Query: 251 RADGTIRTVEYSADKHSGFNAVVETRG 331
R D + VEYS SG+N VV T G
Sbjct: 115 RHDAAVSCVEYSYSTVSGYNLVVATAG 141
>06_03_1030 - 27014654-27014817,27015082-27015121,27015885-27016244
Length = 187
Score = 27.5 bits (58), Expect = 5.9
Identities = 9/20 (45%), Positives = 15/20 (75%)
Frame = -1
Query: 423 YFICIRTHPLVKSRWIISDD 364
+F+C RT ++KS+ I+ DD
Sbjct: 23 FFLCCRTQDMLKSKLILEDD 42
>04_03_0282 -
13874547-13874738,13875047-13875134,13875222-13875328,
13875487-13875542,13875853-13875882,13877397-13877505,
13877774-13878318,13879584-13879668,13879753-13879914,
13880293-13880434,13880524-13880624,13882307-13882489
Length = 599
Score = 27.5 bits (58), Expect = 5.9
Identities = 10/22 (45%), Positives = 15/22 (68%)
Frame = -1
Query: 399 PLVKSRWIISDDDDLQVQHGEH 334
P +K R ++DDD+ VQ+G H
Sbjct: 270 PAIKDRICATEDDDMHVQNGLH 291
>04_01_0285 - 3794628-3794801,3794935-3795090,3795232-3795729
Length = 275
Score = 27.5 bits (58), Expect = 5.9
Identities = 17/50 (34%), Positives = 24/50 (48%)
Frame = -1
Query: 363 DDLQVQHGEHDPRVSTTALNPLCLSALYSTVLMVPSARADCTRPSQRHRH 214
DDL+ H V T +P +S V+++ S R DC PS+R H
Sbjct: 54 DDLRCACRIHRRDVQVTHYHPKHFFVTFSRVVVLTSPRLDC--PSRRSYH 101
>04_04_0548 +
26172595-26173189,26173346-26173473,26173606-26173866,
26173988-26174250,26176748-26177099
Length = 532
Score = 27.1 bits (57), Expect = 7.8
Identities = 13/31 (41%), Positives = 17/31 (54%), Gaps = 2/31 (6%)
Frame = -1
Query: 195 CCRRCEDPLLCTQRRI*DE--RDSRRGGRHV 109
C R C D ++ RR+ DE RD GGR +
Sbjct: 447 CGRACVDSIMARHRRVADEACRDGGGGGRGI 477
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,004,604
Number of Sequences: 37544
Number of extensions: 206054
Number of successful extensions: 608
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 603
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 608
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 979080328
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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