Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30666
         (477 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_59616| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.37 
SB_30517| Best HMM Match : HLH (HMM E-Value=6.9e-15)                   29   1.5  
SB_50147| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.6  
SB_12216| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   3.4  
SB_3463| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   6.0  

>SB_59616| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2735

 Score = 31.5 bits (68), Expect = 0.37
 Identities = 10/33 (30%), Positives = 20/33 (60%)
 Frame = -1

Query: 432  IHQYFICIRTHPLVKSRWIISDDDDLQVQHGEH 334
            I  +++ +R HPL+K RW  + D + +++   H
Sbjct: 1435 IFNFYLYLRKHPLIKRRWFTNPDQERRLKGVRH 1467


>SB_30517| Best HMM Match : HLH (HMM E-Value=6.9e-15)
          Length = 178

 Score = 29.5 bits (63), Expect = 1.5
 Identities = 14/40 (35%), Positives = 21/40 (52%)
 Frame = +3

Query: 198 YQHETRDGDVVKGVYSLHEPMVPSGLLSTAPINTADSTQL 317
           +QH+  D D  KG+Y+L  P    G+   +PI T +   L
Sbjct: 37  HQHQDFDPDFAKGIYNL-RPRSGPGIAPNSPIKTDEEFHL 75


>SB_50147| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 739

 Score = 28.7 bits (61), Expect = 2.6
 Identities = 17/55 (30%), Positives = 27/55 (49%), Gaps = 1/55 (1%)
 Frame = -1

Query: 372 SDDDDLQVQHGEHDPRV-STTALNPLCLSALYSTVLMVPSARADCTRPSQRHRHG 211
           +DDDD + + G+HD +       +P       +T    PSA AD  + S + +HG
Sbjct: 339 ADDDDDEEKQGKHDDKTFPPNTASPSTTKTTPTTPRTTPSASADKKKESGK-KHG 392


>SB_12216| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2992

 Score = 28.3 bits (60), Expect = 3.4
 Identities = 12/36 (33%), Positives = 21/36 (58%)
 Frame = -2

Query: 425  NILFVYGLIRW*NRDGLLVMMMIFRYNMVSMTLASP 318
            +++  YG I + N DG + M  + RYN+ S ++  P
Sbjct: 1004 SVVAKYGCIHFWNADGKVGMQYLVRYNVSSYSVLQP 1039


>SB_3463| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 537

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 16/40 (40%), Positives = 19/40 (47%)
 Frame = -1

Query: 165 CTQRRI*DERDSRRGGRHVRDDVHDRGVALNELHGAIPHD 46
           C QR    ER +R     V  D+  RG+  N L G IP D
Sbjct: 58  CGQRMRGTERRARERFALVLSDIVARGLVQNILDGGIPED 97


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,816,572
Number of Sequences: 59808
Number of extensions: 241803
Number of successful extensions: 678
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 626
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 677
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 989515521
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)