Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30666
         (477 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g01280.1 68415.m00042 transcription factor IIB (TFIIB) family...    30   0.70 
At5g07260.1 68418.m00828 homeobox protein-related contains weak ...    29   2.2  
At3g08505.2 68416.m00987 zinc finger (CCCH-type/C3HC4-type RING ...    29   2.2  
At3g08505.1 68416.m00986 zinc finger (CCCH-type/C3HC4-type RING ...    29   2.2  
At3g18210.1 68416.m02316 oxidoreductase, 2OG-Fe(II) oxygenase fa...    28   2.8  
At5g09400.1 68418.m01089 potassium transporter family protein si...    27   5.0  
At3g24650.1 68416.m03095 abscisic acid-insensitive protein 3 (AB...    27   5.0  
At4g01580.1 68417.m00206 transcriptional factor B3 family protei...    27   8.7  
At3g29050.1 68416.m03634 receptor-like protein kinase-related co...    27   8.7  

>At2g01280.1 68415.m00042 transcription factor IIB (TFIIB) family
           protein contains Pfam domain, PF00382: Transcription
           factor TFIIB repeat
          Length = 561

 Score = 30.3 bits (65), Expect = 0.70
 Identities = 15/28 (53%), Positives = 19/28 (67%), Gaps = 3/28 (10%)
 Frame = -1

Query: 378 IISDDDDLQVQH---GEHDPRVSTTALN 304
           I SDDDD +V+H   GE + R+ TTA N
Sbjct: 392 ICSDDDDSEVEHVLLGEDETRLKTTAWN 419


>At5g07260.1 68418.m00828 homeobox protein-related contains weak
           similarity to Homeobox protein FWA (Swiss-Prot:Q9FVI6)
           [Arabidopsis thaliana]
          Length = 541

 Score = 28.7 bits (61), Expect = 2.2
 Identities = 12/33 (36%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
 Frame = -1

Query: 246 DCTRPSQRHR-HGSRAGTCCRRCEDPLLCTQRR 151
           D  R   R R H   + + CR CE+P++ T+ R
Sbjct: 16  DLLRAENRARIHAMTSPSICRSCEEPIISTEER 48


>At3g08505.2 68416.m00987 zinc finger (CCCH-type/C3HC4-type RING
           finger) family protein contains zinc finger
           C-x8-C-x5-C-x3-H type (and similar) domains,
           Pfam:PF00642 and zinc finger, C3HC4 type (RING finger)
           domain, Pfam:PF00097
          Length = 323

 Score = 28.7 bits (61), Expect = 2.2
 Identities = 13/36 (36%), Positives = 18/36 (50%), Gaps = 1/36 (2%)
 Frame = -1

Query: 258 SARADCTRPSQ-RHRHGSRAGTCCRRCEDPLLCTQR 154
           +A  DC R +Q  H HG    TC ++C  P    +R
Sbjct: 110 AAAGDCPRGNQCPHMHGDLCNTCGKKCLHPFRPEER 145


>At3g08505.1 68416.m00986 zinc finger (CCCH-type/C3HC4-type RING
           finger) family protein contains zinc finger
           C-x8-C-x5-C-x3-H type (and similar) domains,
           Pfam:PF00642 and zinc finger, C3HC4 type (RING finger)
           domain, Pfam:PF00097
          Length = 323

 Score = 28.7 bits (61), Expect = 2.2
 Identities = 13/36 (36%), Positives = 18/36 (50%), Gaps = 1/36 (2%)
 Frame = -1

Query: 258 SARADCTRPSQ-RHRHGSRAGTCCRRCEDPLLCTQR 154
           +A  DC R +Q  H HG    TC ++C  P    +R
Sbjct: 110 AAAGDCPRGNQCPHMHGDLCNTCGKKCLHPFRPEER 145


>At3g18210.1 68416.m02316 oxidoreductase, 2OG-Fe(II) oxygenase
           family protein contains Pfam domain PF03171 2OG-Fe(II)
           oxygenase superfamily
          Length = 394

 Score = 28.3 bits (60), Expect = 2.8
 Identities = 12/21 (57%), Positives = 13/21 (61%)
 Frame = -1

Query: 225 RHRHGSRAGTCCRRCEDPLLC 163
           RHRHG+RA TC  R    L C
Sbjct: 325 RHRHGARATTCGHRVNMLLWC 345


>At5g09400.1 68418.m01089 potassium transporter family protein
           similar to K+ transporter HAK5 [Arabidopsis thaliana]
           GI:7108597; contains Pfam profile PF02705: K+ potassium
           transporter; KUP/HAK/KT Transporter family member,
           PMID:11500563; Note: possible sequencing error causes a
           frameshift in the 4th exon|15810448|gb|AY056263
          Length = 858

 Score = 27.5 bits (58), Expect = 5.0
 Identities = 8/15 (53%), Positives = 13/15 (86%)
 Frame = -1

Query: 393 VKSRWIISDDDDLQV 349
           ++SRW+I DDDD ++
Sbjct: 31  IESRWVIQDDDDSEI 45


>At3g24650.1 68416.m03095 abscisic acid-insensitive protein 3 (ABI3)
           identical to abscisic acid-insensitive protein 3
           GI:16146 SP:Q01593 from [Arabidopsis thaliana], (Plant
           Cell 4 (10), 1251-1261 (1992))
          Length = 720

 Score = 27.5 bits (58), Expect = 5.0
 Identities = 15/39 (38%), Positives = 22/39 (56%)
 Frame = +3

Query: 174 DPHTGDNKYQHETRDGDVVKGVYSLHEPMVPSGLLSTAP 290
           D H GDN + H  +D D++  V+  H+P +  G L T P
Sbjct: 43  DDHGGDNNHVHGHQDDDLI--VH--HDPSIFYGDLPTLP 77


>At4g01580.1 68417.m00206 transcriptional factor B3 family protein
           contains Pfam profile PF02362: B3 DNA binding domain
          Length = 190

 Score = 26.6 bits (56), Expect = 8.7
 Identities = 17/48 (35%), Positives = 23/48 (47%), Gaps = 1/48 (2%)
 Frame = -1

Query: 471 LYFIYHKVNGF-IIIHQYFICIRTHPLVKSRWIISDDDDLQVQHGEHD 331
           L F Y K + F +II     C   +PL     I SDDD +++   E D
Sbjct: 104 LLFEYKKNSSFRVIIFNASACETNYPLDAVHIIDSDDDVIEITGKEFD 151


>At3g29050.1 68416.m03634 receptor-like protein kinase-related
           contains Pfam profile: PF01657 Domain of unknown
           function that is usually associated with protein kinase
           domain Pfam:PF00069; similar to receptor-like protein
           kinase 5 (GI:13506747){Arabidopsis thaliana}
          Length = 240

 Score = 26.6 bits (56), Expect = 8.7
 Identities = 11/40 (27%), Positives = 22/40 (55%)
 Frame = +3

Query: 189 DNKYQHETRDGDVVKGVYSLHEPMVPSGLLSTAPINTADS 308
           D+  Q  ++D +V +G +   +   P+G  ST+P N  ++
Sbjct: 42  DSGIQQLSKDNEVFRGGFVYMDHTDPNGTRSTSPFNAVET 81


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,686,869
Number of Sequences: 28952
Number of extensions: 157100
Number of successful extensions: 409
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 404
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 409
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 821630280
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)